| Back to Long Tests report for BioC 3.21 |
This page was generated on 2025-04-05 23:55 -0400 (Sat, 05 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4807 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4576 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4605 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 6/30 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.13.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | |||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.13.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz |
| StartedAt: 2025-04-05 16:01:06 -0400 (Sat, 05 Apr 2025) |
| EndedAt: 2025-04-05 16:04:45 -0400 (Sat, 05 Apr 2025) |
| EllapsedTime: 219.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-04-05 16:01:41.594][biodb::testContext]
biodb.INFO [2025-04-05 16:01:41.596][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-05 16:01:41.597][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-04-05 16:01:41.598][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-05 16:01:41.599][biodb::testContext]
biodb.INFO [2025-04-05 16:01:41.605][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-04-05 16:01:41.607][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-04-05 16:01:41.615][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-05 16:01:41.616][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-05 16:01:41.617][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-05 16:01:41.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.621][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-05 16:01:41.641][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-05 16:01:41.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.645][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-05 16:01:41.647][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-05 16:01:41.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.651][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-05 16:01:41.652][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-05 16:01:41.653][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-05 16:01:41.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.657][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-05 16:01:41.658][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-05 16:01:41.659][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-05 16:01:41.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.663][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-05 16:01:41.664][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-05 16:01:41.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.668][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-05 16:01:41.669][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-05 16:01:41.670][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-05 16:01:41.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.674][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-05 16:01:41.675][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-05 16:01:41.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.679][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-05 16:01:41.680][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-05 16:01:41.681][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-05 16:01:41.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.685][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-05 16:01:41.686][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-05 16:01:41.687][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-05 16:01:41.688][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-05 16:01:41.689][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-05 16:01:41.690][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-05 16:01:41.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.694][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-05 16:01:41.695][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-05 16:01:41.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.699][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-05 16:01:41.700][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-05 16:01:41.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.704][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-05 16:01:41.705][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-05 16:01:41.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.709][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-05 16:01:41.710][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-05 16:01:41.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.714][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-05 16:01:41.715][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-05 16:01:41.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.719][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-05 16:01:41.720][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-05 16:01:41.725][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-05 16:01:41.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.729][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-05 16:01:41.730][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-05 16:01:41.731][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-05 16:01:41.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.738][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-05 16:01:41.775][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.799][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-05 16:01:41.800][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.801][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:41.802][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.803][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.804][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.805][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.806][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-05 16:01:41.807][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:41.808][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.808][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-05 16:01:41.809][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:41.810][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.811][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.812][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-05 16:01:41.812][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-05 16:01:41.812][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-05 16:01:41.812][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-05 16:01:41.812][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-05 16:01:41.813][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-05 16:01:41.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:41.815][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:41.816][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:41.817][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:41.817][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:41.818][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.819][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.820][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:41.821][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:41.822][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.823][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.824][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-05 16:01:41.825][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.826][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-05 16:01:41.827][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.828][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:41.829][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.830][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.831][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.832][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.833][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-05 16:01:41.834][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:41.835][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.836][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-05 16:01:41.837][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:41.838][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.839][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.839][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-05 16:01:41.839][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-05 16:01:41.839][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-05 16:01:41.839][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-05 16:01:41.839][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-05 16:01:41.840][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-05 16:01:41.841][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:41.842][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:41.843][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:41.844][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:41.845][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:41.846][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.847][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.848][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:41.848][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:41.849][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.850][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.851][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-05 16:01:41.853][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.854][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-05 16:01:41.855][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.856][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:41.857][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.858][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.858][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.859][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.860][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-05 16:01:41.861][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:41.862][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.863][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-05 16:01:41.864][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:41.865][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.866][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.867][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.868][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-05 16:01:41.869][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:41.869][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:41.870][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:41.871][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:41.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:41.873][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.874][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.875][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:41.876][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:41.877][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.877][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.879][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-05 16:01:41.880][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.881][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-05 16:01:41.882][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.883][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:41.884][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.885][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.886][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.887][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.888][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-05 16:01:41.889][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:41.890][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.890][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-05 16:01:41.891][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:41.892][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.893][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:41.894][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.895][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-05 16:01:41.896][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:41.897][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:41.898][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:41.899][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:41.899][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:41.900][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:41.901][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.902][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:41.903][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:41.904][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:41.905][self$setPropertyValue]
biodb.DEBUG[2025-04-05 16:01:41.908][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-05 16:01:41.909][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:41.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:41.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:41.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:41.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:41.994][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-05 16:01:42.000][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-05 16:01:42.001][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-05 16:01:42.003][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-05 16:01:42.004][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-05 16:01:42.006][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-05 16:01:42.007][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-05 16:01:42.009][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-05 16:01:42.010][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-05 16:01:42.012][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-05 16:01:42.013][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-05 16:01:42.015][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-05 16:01:42.016][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-05 16:01:42.017][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-05 16:01:42.019][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-05 16:01:42.020][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-05 16:01:42.022][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-05 16:01:42.023][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-05 16:01:42.025][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-05 16:01:42.026][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-05 16:01:42.028][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-05 16:01:42.029][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-05 16:01:42.030][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-05 16:01:42.032][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-05 16:01:42.033][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-05 16:01:42.035][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-05 16:01:42.036][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-05 16:01:42.038][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-05 16:01:42.039][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-05 16:01:42.040][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-05 16:01:42.042][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-05 16:01:42.043][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-05 16:01:42.045][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-05 16:01:42.046][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-05 16:01:42.047][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-05 16:01:42.049][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-05 16:01:42.050][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-05 16:01:42.052][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-05 16:01:42.053][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-05 16:01:42.055][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-05 16:01:42.072][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-05 16:01:42.074][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-05 16:01:42.075][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-05 16:01:42.076][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-05 16:01:42.078][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-05 16:01:42.079][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-05 16:01:42.081][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-05 16:01:42.082][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-05 16:01:42.084][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-05 16:01:42.085][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-05 16:01:42.086][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-05 16:01:42.088][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-05 16:01:42.089][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-05 16:01:42.091][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-05 16:01:42.092][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-05 16:01:42.094][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-05 16:01:42.095][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-05 16:01:42.097][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-05 16:01:42.098][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-05 16:01:42.099][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-05 16:01:42.101][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-05 16:01:42.102][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-05 16:01:42.104][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-05 16:01:42.105][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-05 16:01:42.107][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-05 16:01:42.109][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-05 16:01:42.110][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-05 16:01:42.111][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-05 16:01:42.113][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-05 16:01:42.114][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-05 16:01:42.116][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-05 16:01:42.117][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-05 16:01:42.118][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-05 16:01:42.120][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-05 16:01:42.121][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-05 16:01:42.123][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-05 16:01:42.124][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-05 16:01:42.126][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-05 16:01:42.127][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-05 16:01:42.128][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-05 16:01:42.130][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-05 16:01:42.131][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-05 16:01:42.133][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-05 16:01:42.139][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-05 16:01:42.141][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-04-05 16:01:42.144][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-05 16:01:42.145][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.147][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-05 16:01:42.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:42.257][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-04-05 16:01:42.267][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-04-05 16:01:42.268][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:42.269][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-05 16:01:42.270][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:42.271][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-05 16:01:42.272][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:42.273][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-05 16:01:42.274][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:42.275][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-04-05 16:01:42.276][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-05 16:01:42.277][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-05 16:01:42.278][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:42.279][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-04-05 16:01:42.280][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-04-05 16:01:42.281][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-04-05 16:01:42.282][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-05 16:01:42.283][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-05 16:01:42.283][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-05 16:01:42.283][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-05 16:01:42.284][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-05 16:01:42.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:42.285][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:42.286][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-05 16:01:42.287][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-05 16:01:42.288][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-05 16:01:42.289][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-05 16:01:42.290][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:42.290][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-04-05 16:01:42.291][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-05 16:01:42.292][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-05 16:01:42.293][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-05 16:01:42.293][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-04-05 16:01:42.293][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-04-05 16:01:42.299][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-05 16:01:42.301][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-05 16:01:42.302][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-04-05 16:01:42.303][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-05 16:01:42.305][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-05 16:01:42.306][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-05 16:01:42.332][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-04-05 16:01:42.333][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-04-05 16:01:42.337][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-04-05 16:01:42.341][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-04-05 16:01:42.345][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-05 16:01:42.345][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-05 16:01:42.347][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-04-05 16:01:42.348][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-04-05 16:01:42.356][biodb::testThat]
biodb.INFO [2025-04-05 16:01:42.357][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-04-05 16:01:42.358][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:42.359][biodb::testThat]
biodb.TRACE[2025-04-05 16:01:42.362][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-04-05 16:01:42.363][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:42.367][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:42.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:42.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:42.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:42.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:42.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:42.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:42.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:42.399][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.418][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:42.419][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:42.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.446][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:42.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:42.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.450][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:42.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:42.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:42.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:42.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:42.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:42.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:42.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.481][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:42.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.485][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:42.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:42.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:42.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.504][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:42.505][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:42.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:42.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:42.607][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-04-05 16:01:42.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:42.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:42.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:42.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:42.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:42.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.755][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:42.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.809][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:42.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:42.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.834][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:42.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:42.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.858][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.907][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:42.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:42.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.925][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.932][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:42.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:42.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.055][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.061][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.089][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.102][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.108][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.133][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-04-05 16:01:43.165][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:43.166][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:43.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:43.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:43.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:43.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:43.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:43.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:43.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:43.182][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.204][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.205][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.212][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.243][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:43.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.259][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.267][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:43.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:43.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:43.319][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-04-05 16:01:43.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:43.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:43.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:43.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:43.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.502][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.527][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.541][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:43.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.552][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:43.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.556][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:43.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.606][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.631][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.634][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.644][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.655][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.656][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.676][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.680][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.681][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.755][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.756][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.768][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.775][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.785][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.798][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.806][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.811][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.812][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.825][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.826][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.831][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.844][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-04-05 16:01:43.846][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:43.847][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:43.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:43.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:43.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:43.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:43.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:43.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:43.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:43.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.866][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.867][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:43.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.874][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:43.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.905][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:43.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.909][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:43.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:43.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:43.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.928][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:43.929][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:43.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.936][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.937][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:43.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:43.981][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-04-05 16:01:43.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:43.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:43.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:43.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:43.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:44.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:44.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:44.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.187][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.216][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.265][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.279][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.283][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.286][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.290][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.315][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.340][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.353][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.360][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.361][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.366][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.367][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.379][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.380][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.387][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.392][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.409][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.422][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.423][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.425][ef$get] fields variable is a list.
biodb.INFO [2025-04-05 16:01:44.431][biodb::testThat]
biodb.INFO [2025-04-05 16:01:44.432][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-05 16:01:44.433][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:44.434][biodb::testThat]
biodb.DEBUG[2025-04-05 16:01:44.436][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-04-05 16:01:44.442][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-05 16:01:44.446][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2025-04-05 16:01:44.447][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-04-05 16:01:44.450][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-04-05 16:01:44.451][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:44.452][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-04-05 16:01:44.453][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:44.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:44.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:44.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:44.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:44.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:44.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:44.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:44.465][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.472][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.504][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.511][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:44.512][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.514][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:44.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.518][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.519][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.526][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.534][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:44.535][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:44.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:44.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:44.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:44.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:44.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:44.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:44.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:44.585][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.593][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.600][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.635][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:44.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:44.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.651][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.658][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:44.659][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:44.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:44.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:44.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:44.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:44.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:44.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:44.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:44.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.718][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.719][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:44.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.725][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.726][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:44.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.756][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:44.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.760][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:44.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.771][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.779][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:44.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:44.857][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-04-05 16:01:44.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-05 16:01:44.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-05 16:01:44.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:01:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:01:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:01:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:01:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-05 16:01:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-05 16:01:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:01:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:01:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:01:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:01:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-05 16:01:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-05 16:01:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:01:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-05 16:01:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:01:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-05 16:01:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:01:44.904][biodb::testThat]
biodb.INFO [2025-04-05 16:01:44.905][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-05 16:01:44.905][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:44.906][biodb::testThat]
biodb.TRACE[2025-04-05 16:01:44.909][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.912][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:44.913][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-04-05 16:01:44.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:44.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:44.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:44.948][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-04-05 16:01:44.952][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-04-05 16:01:44.971][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:01:44.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-04-05 16:01:44.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:01:44.988][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-04-05 16:01:45.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:01:45.016][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:01:45.017][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:01:45.018][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:01:45.020][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:01:45.022][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-04-05 16:01:45.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:45.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:45.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.035][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.036][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.038][ef$get] fields variable is a list.
biodb.INFO [2025-04-05 16:01:45.041][biodb::testThat]
biodb.INFO [2025-04-05 16:01:45.042][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-04-05 16:01:45.043][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:45.044][biodb::testThat]
biodb.TRACE[2025-04-05 16:01:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:45.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:45.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:45.125][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:01:45.128][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:01:45.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:01:45.130][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:01:45.132][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-04-05 16:01:45.145][biodb::testThat]
biodb.INFO [2025-04-05 16:01:45.146][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-04-05 16:01:45.146][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:45.147][biodb::testThat]
biodb.TRACE[2025-04-05 16:01:45.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:45.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:45.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:45.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:45.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:45.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.178][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:45.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:45.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:45.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:45.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:45.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:45.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:45.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:45.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-05 16:01:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-05 16:01:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:45.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-05 16:01:45.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:45.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-05 16:01:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:01:45.247][biodb::testThat]
biodb.INFO [2025-04-05 16:01:45.248][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-05 16:01:45.249][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:45.250][biodb::testThat]
biodb.INFO [2025-04-05 16:01:45.258][biodb::testThat]
biodb.INFO [2025-04-05 16:01:45.259][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-05 16:01:45.259][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:45.260][biodb::testThat]
biodb.INFO [2025-04-05 16:01:45.269][biodb::testThat]
biodb.INFO [2025-04-05 16:01:45.269][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-05 16:01:45.270][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:45.271][biodb::testThat]
biodb.DEBUG[2025-04-05 16:01:45.274][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-04-05 16:01:46.456][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-04-05 16:01:47.891][biodb::testThat]
biodb.INFO [2025-04-05 16:01:47.892][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-05 16:01:47.894][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:47.895][biodb::testThat]
biodb.DEBUG[2025-04-05 16:01:48.255][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-04-05 16:01:48.628][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:48.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:48.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:48.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:48.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:48.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.650][ef$get] fields variable is a list.
biodb.INFO [2025-04-05 16:01:48.655][biodb::testThat]
biodb.INFO [2025-04-05 16:01:48.658][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-04-05 16:01:48.661][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:01:48.663][biodb::testThat]
biodb.TRACE[2025-04-05 16:01:48.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:48.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:48.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:48.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:48.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:48.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:48.775][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:01:48.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:01:48.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:01:48.781][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:01:48.783][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:01:48.852][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:01:48.855][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:01:48.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:01:48.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:01:48.859][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-04-05 16:01:48.871][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:01:48.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:01:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:48.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:48.903][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:01:48.906][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:01:48.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:01:48.908][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:01:48.910][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:01:48.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:48.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:48.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:48.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:48.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:48.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:48.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:48.921][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-04-05 16:01:48.964][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:01:48.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-04-05 16:01:48.968][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:01:48.969][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:01:48.970][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:48.971][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:48.972][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:01:48.972][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:01:48.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:48.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:48.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:48.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:48.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:48.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:48.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:48.989][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2025-04-05 16:01:48.992][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:48.992][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:48.994][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2025-04-05 16:01:54.376][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2025-04-05 16:01:54.730][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:01:54.732][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2025-04-05 16:01:54.746][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2025-04-05 16:01:54.748][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2025-04-05 16:01:54.750][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:01:54.751][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:54.752][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:54.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:54.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:54.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:54.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:54.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:54.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:54.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:54.764][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.772][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:54.773][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:54.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.780][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:54.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:54.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:54.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:54.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:54.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:54.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.804][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:54.805][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:54.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.807][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:54.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:54.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:54.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.823][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:54.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:54.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.831][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:54.832][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:54.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:54.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:54.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:54.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:54.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:54.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:54.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:54.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:54.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:54.891][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-04-05 16:01:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:54.913][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:01:54.916][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:01:54.917][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:01:54.918][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:01:54.920][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:01:54.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:54.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:54.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:54.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:54.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:54.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:54.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:54.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:54.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:54.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:54.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:54.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:54.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:54.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:54.964][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-04-05 16:01:54.965][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:01:54.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-04-05 16:01:54.968][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:01:54.969][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:01:54.970][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:54.971][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:54.972][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:01:54.973][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:01:54.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:54.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:54.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:54.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:54.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:54.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:54.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:54.995][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2025-04-05 16:01:55.017][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:55.019][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:55.036][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2025-04-05 16:01:55.385][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2025-04-05 16:01:55.730][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:01:55.733][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2025-04-05 16:01:55.737][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2025-04-05 16:01:55.754][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2025-04-05 16:01:55.760][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:01:55.761][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:55.762][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:55.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:55.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:55.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:55.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:55.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:55.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:55.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:55.778][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.788][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:55.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:55.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.799][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:55.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:55.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:55.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:55.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:55.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:55.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:55.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:55.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:55.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:55.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.824][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:55.825][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:55.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.828][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:55.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:55.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:55.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:55.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:55.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:55.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.845][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:55.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:55.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:55.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:55.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.854][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:55.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:55.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:55.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:55.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:55.863][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:55.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:55.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:55.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:55.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:55.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:55.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:55.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:55.910][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-04-05 16:01:55.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:55.942][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:01:55.945][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:01:55.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:01:55.948][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:01:55.949][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:01:55.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:55.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:55.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:55.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:55.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:55.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:55.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:55.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:55.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:55.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:55.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:55.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:55.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:55.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:55.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:55.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:55.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:55.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:55.981][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-04-05 16:01:55.982][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:01:55.984][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-04-05 16:01:55.985][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:01:55.986][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:01:55.987][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:55.988][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:55.989][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:01:55.990][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:01:55.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:55.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:55.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:55.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:55.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:56.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:56.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:56.001][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2025-04-05 16:01:56.004][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:56.005][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:56.006][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2025-04-05 16:01:56.350][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2025-04-05 16:01:56.701][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:01:56.706][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2025-04-05 16:01:56.713][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2025-04-05 16:01:56.719][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2025-04-05 16:01:56.722][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:01:56.724][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:56.727][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:56.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:56.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:56.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:56.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:56.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:56.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:56.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:56.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.766][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:56.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:56.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:56.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:56.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:56.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:56.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:56.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:56.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:56.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:56.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.790][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:56.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:56.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:56.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.798][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:56.799][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:56.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.806][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:56.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:56.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.814][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:56.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:56.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:56.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:56.863][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-04-05 16:01:56.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:56.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:56.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:56.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:56.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:56.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:56.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:56.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:56.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:56.893][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-04-05 16:01:56.894][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:01:56.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-04-05 16:01:56.896][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:01:56.897][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:01:56.898][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:56.899][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:56.900][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:01:56.901][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:01:56.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:56.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:56.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:56.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:56.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:56.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:56.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:56.913][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2025-04-05 16:01:56.915][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:56.916][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:56.918][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2025-04-05 16:01:57.265][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2025-04-05 16:01:57.623][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:01:57.628][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2025-04-05 16:01:57.635][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2025-04-05 16:01:57.641][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2025-04-05 16:01:57.644][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:01:57.647][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:57.650][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:57.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:57.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:57.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:57.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:57.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:57.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:57.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:57.679][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:57.697][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:57.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:57.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:57.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:57.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:57.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:57.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:57.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.720][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:57.721][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:57.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.724][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:57.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:57.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:57.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.733][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:57.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:57.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.742][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:57.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:57.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:57.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:57.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:57.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:57.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:57.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:57.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:57.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:57.832][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-04-05 16:01:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:57.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:57.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:57.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:57.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:57.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:57.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:57.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:57.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:57.862][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-04-05 16:01:57.863][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:01:57.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-04-05 16:01:57.866][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:01:57.867][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:01:57.868][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:57.869][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:57.870][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:01:57.871][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:01:57.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:57.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:57.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:57.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:57.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:57.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:57.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:57.883][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2025-04-05 16:01:57.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:57.886][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:57.887][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2025-04-05 16:01:58.236][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2025-04-05 16:01:58.587][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:01:58.591][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2025-04-05 16:01:58.598][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2025-04-05 16:01:58.604][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2025-04-05 16:01:58.607][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:01:58.610][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:58.612][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:58.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:58.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:58.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:58.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:58.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:58.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:58.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:58.638][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.651][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:58.653][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:58.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.657][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:58.658][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:58.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:58.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:58.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:58.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:58.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:58.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:58.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.676][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:58.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:58.681][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:58.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:58.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:58.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:58.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:58.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.700][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:58.701][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:58.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:58.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:58.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:58.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:58.750][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-04-05 16:01:58.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:58.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:58.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:58.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:58.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:58.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:58.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:58.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:58.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:58.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:58.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:58.780][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-04-05 16:01:58.781][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:01:58.782][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-04-05 16:01:58.784][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:01:58.785][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:01:58.786][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:58.787][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:58.788][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:01:58.788][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:01:58.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:58.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:58.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:58.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:58.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:58.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:58.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:58.800][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2025-04-05 16:01:58.803][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:58.804][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:58.805][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2025-04-05 16:01:59.151][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2025-04-05 16:01:59.513][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:01:59.518][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2025-04-05 16:01:59.525][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2025-04-05 16:01:59.530][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2025-04-05 16:01:59.533][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:01:59.536][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:01:59.539][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:01:59.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:59.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:59.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:59.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:59.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:59.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:59.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:01:59.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.578][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:59.579][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:59.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:01:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:01:59.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.588][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:59.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:59.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:01:59.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:01:59.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:59.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:59.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:01:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:01:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:59.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:59.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:01:59.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:01:59.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:59.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:59.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:59.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:01:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.629][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:59.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:59.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:01:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:59.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:59.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:59.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:01:59.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.645][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:59.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:59.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:01:59.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:01:59.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.653][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:59.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:59.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:01:59.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:01:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.661][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:59.662][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:59.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:01:59.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:01:59.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:01:59.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:01:59.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:01:59.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:01:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:59.706][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-04-05 16:01:59.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:59.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:59.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:01:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:59.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:01:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:01:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:01:59.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:59.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:59.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:59.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:59.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:59.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:59.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:59.728][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-04-05 16:01:59.729][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:01:59.730][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-04-05 16:01:59.731][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:01:59.733][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:01:59.734][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:01:59.735][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:01:59.735][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:01:59.736][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:01:59.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:01:59.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:01:59.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:01:59.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:01:59.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:01:59.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:01:59.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:01:59.748][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2025-04-05 16:01:59.751][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:01:59.752][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:01:59.753][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2025-04-05 16:02:00.100][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2025-04-05 16:02:00.456][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:00.461][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2025-04-05 16:02:00.468][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2025-04-05 16:02:00.473][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2025-04-05 16:02:00.476][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:00.479][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:00.482][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:00.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:00.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:00.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:00.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:00.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:00.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:00.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:00.508][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.521][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:00.522][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:00.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:00.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:00.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:00.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:00.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:00.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:00.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:00.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:00.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:00.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:00.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:00.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:00.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:00.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:00.573][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:00.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.576][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:00.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:00.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.581][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:00.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:00.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.585][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:00.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:00.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.590][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:00.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:00.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.599][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:00.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:00.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:00.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:00.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.608][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:00.609][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:00.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:00.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:00.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:00.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:00.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:00.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:00.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:00.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:00.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:00.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:00.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:00.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:00.670][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-04-05 16:02:00.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:00.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:00.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:00.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:00.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:00.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:00.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:00.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:00.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:00.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:00.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:00.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:00.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:00.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:00.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:00.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:00.697][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-04-05 16:02:00.698][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:00.700][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-04-05 16:02:00.701][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:00.702][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:00.704][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:00.705][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:00.706][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:00.707][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:00.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:00.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:00.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:00.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:00.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:00.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:00.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:00.721][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2025-04-05 16:02:00.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:00.725][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:00.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2025-04-05 16:02:01.074][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2025-04-05 16:02:01.432][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:01.437][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2025-04-05 16:02:01.476][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2025-04-05 16:02:01.481][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2025-04-05 16:02:01.484][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:01.486][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:01.488][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:01.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:01.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:01.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:01.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:01.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:01.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:01.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:01.506][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.516][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:01.517][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:01.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.524][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:01.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:01.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:01.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:01.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:01.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:01.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:01.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:01.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.547][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.548][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:01.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.551][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:01.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.555][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:01.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:01.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.567][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:01.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.574][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:01.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:01.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:01.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:01.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.582][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:01.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:01.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:01.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:01.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:01.628][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-04-05 16:02:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:01.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:01.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:01.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:01.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:01.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:01.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:01.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:01.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:01.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:01.650][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-04-05 16:02:01.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:01.652][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-04-05 16:02:01.657][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:01.659][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:01.660][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:01.661][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:01.662][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:01.663][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:01.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:01.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:01.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:01.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:01.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:01.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:01.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:01.675][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2025-04-05 16:02:01.677][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:01.678][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:01.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2025-04-05 16:02:02.039][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2025-04-05 16:02:02.399][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:02.404][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2025-04-05 16:02:02.411][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2025-04-05 16:02:02.416][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2025-04-05 16:02:02.419][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:02.422][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:02.425][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:02.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:02.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:02.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:02.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:02.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:02.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:02.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:02.451][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.463][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:02.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:02.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:02.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:02.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:02.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:02.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:02.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:02.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:02.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.499][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:02.500][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:02.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.503][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:02.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:02.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.507][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:02.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:02.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:02.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:02.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:02.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.526][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:02.527][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:02.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:02.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:02.535][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:02.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:02.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:02.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:02.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:02.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:02.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:02.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:02.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:02.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:02.587][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-04-05 16:02:02.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:02.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:02.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:02.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:02.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:02.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:02.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:02.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:02.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:02.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:02.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:02.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:02.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:02.608][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-04-05 16:02:02.609][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:02.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-04-05 16:02:02.612][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:02.613][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:02.614][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:02.615][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:02.616][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:02.617][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:02.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:02.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:02.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:02.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:02.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:02.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:02.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:02.629][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2025-04-05 16:02:02.631][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:02.632][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:02.633][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2025-04-05 16:02:02.987][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2025-04-05 16:02:03.345][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:03.349][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2025-04-05 16:02:03.356][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2025-04-05 16:02:03.362][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2025-04-05 16:02:03.365][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:03.367][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:03.370][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:03.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:03.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:03.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:03.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:03.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:03.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:03.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:03.396][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.409][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:03.410][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:03.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.415][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:03.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:03.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.420][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:03.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:03.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:03.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:03.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:03.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:03.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.445][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:03.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:03.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.449][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:03.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:03.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.457][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:03.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:03.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.464][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:03.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:03.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:03.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:03.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.472][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:03.473][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:03.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.480][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:03.481][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:03.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:03.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:03.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:03.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:03.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:03.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:03.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:03.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:03.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:03.532][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-04-05 16:02:03.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:03.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:03.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:03.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:03.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:03.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:03.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:03.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:03.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:03.554][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-04-05 16:02:03.555][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:03.556][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-04-05 16:02:03.557][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:03.558][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:03.560][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:03.561][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:03.561][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:03.562][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:03.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:03.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:03.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:03.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:03.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:03.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:03.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:03.574][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2025-04-05 16:02:03.577][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:03.578][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:03.579][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2025-04-05 16:02:03.928][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2025-04-05 16:02:04.289][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:04.293][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2025-04-05 16:02:04.301][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2025-04-05 16:02:04.306][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2025-04-05 16:02:04.310][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:04.312][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:04.315][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:04.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:04.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:04.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:04.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:04.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:04.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:04.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:04.341][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.354][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:04.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:04.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:04.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.364][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:04.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:04.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:04.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:04.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:04.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:04.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:04.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:04.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.389][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:04.390][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:04.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.393][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:04.394][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:04.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:04.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:04.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:04.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:04.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.409][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:04.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:04.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.424][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:04.425][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:04.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.428][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:04.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:04.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.432][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:04.433][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:04.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:04.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:04.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:04.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:04.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:04.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:04.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:04.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:04.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:04.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:04.477][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-04-05 16:02:04.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:04.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:04.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:04.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:04.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:04.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:04.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:04.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:04.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:04.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:04.499][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-04-05 16:02:04.500][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:04.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-04-05 16:02:04.502][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:04.503][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:04.504][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:04.505][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:04.506][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:04.507][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:04.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:04.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:04.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:04.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:04.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:04.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:04.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:04.519][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2025-04-05 16:02:04.522][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:04.523][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:04.524][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2025-04-05 16:02:04.868][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2025-04-05 16:02:05.243][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:05.248][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2025-04-05 16:02:05.255][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2025-04-05 16:02:05.260][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2025-04-05 16:02:05.263][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:05.266][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:05.269][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:05.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:05.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:05.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:05.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:05.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:05.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:05.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:05.295][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.307][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:05.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:05.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.313][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:05.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:05.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:05.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:05.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:05.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:05.328][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:05.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:05.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:05.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:05.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:05.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:05.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.351][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:05.352][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:05.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.355][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:05.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:05.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:05.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:05.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:05.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:05.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:05.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.371][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:05.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:05.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:05.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:05.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.379][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:05.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:05.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:05.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:05.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:05.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:05.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:05.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:05.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:05.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:05.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:05.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:05.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:05.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:05.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:05.432][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-04-05 16:02:05.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:05.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:05.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:05.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:05.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:05.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:05.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:05.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:05.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:05.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:05.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:05.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:05.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:05.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:05.454][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-04-05 16:02:05.455][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:05.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-04-05 16:02:05.458][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:05.459][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:05.460][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:05.461][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:05.462][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:05.463][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:05.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:05.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:05.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:05.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:05.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:05.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:05.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:05.475][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2025-04-05 16:02:05.478][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:05.478][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:05.480][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2025-04-05 16:02:05.831][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2025-04-05 16:02:06.182][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:06.187][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2025-04-05 16:02:06.194][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2025-04-05 16:02:06.199][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2025-04-05 16:02:06.202][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:06.205][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:06.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:06.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:06.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:06.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:06.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:06.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:06.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:06.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:06.234][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.255][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:06.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:06.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.260][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:06.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:06.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.265][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:06.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:06.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:06.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:06.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:06.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:06.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:06.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:06.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:06.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.286][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:06.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:06.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:06.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:06.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:06.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.302][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:06.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:06.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.310][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:06.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:06.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:06.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:06.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:06.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:06.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:06.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:06.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:06.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:06.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:06.359][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-04-05 16:02:06.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:06.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:06.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:06.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:06.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:06.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:06.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:06.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:06.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:06.381][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-04-05 16:02:06.382][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:06.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-04-05 16:02:06.385][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:06.386][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:06.387][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:06.388][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:06.389][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:06.389][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:06.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:06.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:06.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:06.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:06.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:06.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:06.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:06.401][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2025-04-05 16:02:06.404][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:06.405][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:06.406][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2025-04-05 16:02:06.754][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2025-04-05 16:02:07.106][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:07.111][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2025-04-05 16:02:07.118][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2025-04-05 16:02:07.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2025-04-05 16:02:07.140][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:07.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:07.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:07.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:07.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:07.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:07.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:07.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:07.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:07.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:07.168][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.179][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:07.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.188][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:07.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:07.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:07.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:07.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:07.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:07.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.205][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:07.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:07.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.209][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:07.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:07.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:07.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:07.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:07.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.225][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:07.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:07.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.233][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:07.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:07.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:07.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:07.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:07.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:07.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:07.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:07.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:07.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:07.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:07.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:07.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:07.282][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-04-05 16:02:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:07.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:07.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:07.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:07.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:07.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:07.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:07.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:07.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:07.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:07.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:07.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:07.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:07.304][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-04-05 16:02:07.305][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:07.306][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-04-05 16:02:07.307][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:07.308][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:07.309][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:07.310][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:07.311][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:07.312][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:07.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:07.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:07.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:07.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:07.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:07.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:07.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:07.328][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2025-04-05 16:02:07.331][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:07.332][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:07.333][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2025-04-05 16:02:07.682][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2025-04-05 16:02:08.037][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:08.042][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2025-04-05 16:02:08.049][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2025-04-05 16:02:08.054][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2025-04-05 16:02:08.057][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:08.060][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:08.063][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:08.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:08.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:08.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:08.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:08.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:08.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:08.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:08.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:08.103][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:08.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:08.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.112][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:08.113][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:08.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:08.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:08.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:08.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:08.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:08.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:08.138][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:08.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.141][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:08.142][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:08.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:08.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.157][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:08.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:08.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.165][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:08.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:08.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:08.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:08.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:08.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:08.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:08.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:08.218][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-04-05 16:02:08.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:08.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:08.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:08.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:08.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:08.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:08.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:08.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:08.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:08.247][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-04-05 16:02:08.248][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:08.250][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-04-05 16:02:08.251][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:08.252][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:08.253][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:08.254][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:08.255][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:08.256][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:08.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:08.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:08.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:08.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:08.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:08.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:08.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:08.268][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2025-04-05 16:02:08.270][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:08.271][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:08.273][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2025-04-05 16:02:08.620][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2025-04-05 16:02:08.978][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:08.983][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2025-04-05 16:02:08.990][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2025-04-05 16:02:08.995][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2025-04-05 16:02:08.998][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:09.001][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:09.004][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:09.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:09.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:09.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:09.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:09.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:09.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:09.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:09.030][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.032][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:09.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:09.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:09.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:09.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.053][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:09.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:09.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:09.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:09.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:09.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:09.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:09.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:09.072][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:09.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:09.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:09.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:09.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.083][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:09.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:09.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:09.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:09.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:09.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:09.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:09.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:09.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:09.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:09.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:09.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:09.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:09.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:09.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:09.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:09.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:09.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:09.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:09.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:09.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:09.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:09.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:09.167][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-04-05 16:02:09.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:09.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:09.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:09.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:09.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:09.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:09.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:09.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:09.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:09.189][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-04-05 16:02:09.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:09.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-04-05 16:02:09.192][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:09.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:09.194][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:09.195][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:09.196][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:09.197][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:09.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:09.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:09.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:09.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:09.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:09.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:09.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:09.209][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2025-04-05 16:02:09.212][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:09.213][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:09.214][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2025-04-05 16:02:09.559][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2025-04-05 16:02:09.913][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:09.918][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2025-04-05 16:02:09.925][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2025-04-05 16:02:09.930][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2025-04-05 16:02:09.933][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:09.936][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:09.939][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:09.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:09.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:09.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:09.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:09.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:09.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:09.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:09.964][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:09.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:09.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.977][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:09.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:09.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:09.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:09.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.987][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:09.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:09.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:09.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:09.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:09.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:09.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.016][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.032][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.048][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.100][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-04-05 16:02:10.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:10.122][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-04-05 16:02:10.123][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:10.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-04-05 16:02:10.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:10.127][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-04-05 16:02:10.128][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:10.130][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:10.131][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:10.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.143][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.150][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.151][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.158][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.174][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.175][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.181][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.185][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.189][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.201][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.208][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.213][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.266][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-04-05 16:02:10.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:10.287][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-04-05 16:02:10.288][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:10.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-04-05 16:02:10.291][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:10.292][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-04-05 16:02:10.294][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:10.295][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:10.296][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:10.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.308][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.315][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.316][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.319][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.331][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.332][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.346][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.347][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.350][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.354][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.366][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.373][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.431][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-04-05 16:02:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:10.453][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-04-05 16:02:10.454][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:10.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-04-05 16:02:10.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:10.458][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-04-05 16:02:10.459][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:10.460][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:10.461][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:10.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.473][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.481][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.489][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.505][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.506][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.512][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.516][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.517][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.520][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.532][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.543][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.545][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.553][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.597][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-04-05 16:02:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:10.619][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-04-05 16:02:10.619][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:10.621][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-04-05 16:02:10.622][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:10.624][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-04-05 16:02:10.625][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:10.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:10.627][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:10.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.639][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.647][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:10.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:10.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:10.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:10.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:10.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:10.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.682][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.686][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:10.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.691][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:10.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.698][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:10.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:10.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:10.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.763][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-04-05 16:02:10.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.790][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:10.793][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:10.794][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:10.795][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:10.797][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:02:10.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:10.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:10.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:10.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:10.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:10.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:10.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:10.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:10.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:10.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:10.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.304][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:11.307][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:11.308][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-04-05 16:02:11.309][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:11.311][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-04-05 16:02:11.314][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:11.316][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:11.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-04-05 16:02:11.319][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:11.320][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-04-05 16:02:11.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:11.332][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-04-05 16:02:11.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:11.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-04-05 16:02:11.335][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:11.337][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-04-05 16:02:11.338][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:11.339][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:11.340][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:11.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.352][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.364][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:11.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:11.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:11.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:11.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.372][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:11.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:11.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:11.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:11.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:11.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:11.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:11.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.389][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:11.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:11.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.400][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:11.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.404][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:11.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.408][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.420][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:11.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:11.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:11.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:11.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:11.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:11.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:11.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:11.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:11.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:11.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:11.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.481][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-04-05 16:02:11.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:11.523][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-04-05 16:02:11.524][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:11.526][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-04-05 16:02:11.531][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:11.533][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-04-05 16:02:11.534][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:11.535][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:11.536][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:11.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.556][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:11.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:11.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:11.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:11.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.564][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:11.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:11.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:11.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:11.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:11.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:11.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:11.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:11.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.587][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:11.588][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:11.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.591][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:11.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:11.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:11.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.606][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:11.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:11.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:11.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.614][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:11.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:11.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:11.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:11.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:11.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:11.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:11.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:11.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.667][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-04-05 16:02:11.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.699][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:11.702][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:11.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:11.705][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:11.706][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:02:11.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:11.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:11.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:11.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:11.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:11.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:11.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:11.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:11.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:11.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:11.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.167][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:12.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:12.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-05 16:02:12.172][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:12.174][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-05 16:02:12.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:12.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:12.642][biodb::testThat]
biodb.INFO [2025-04-05 16:02:12.643][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-04-05 16:02:12.644][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:12.645][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:12.647][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:12.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:12.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:12.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:12.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:12.725][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:12.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:02:12.727][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:12.728][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:02:12.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:12.754][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:12.755][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:02:12.757][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:12.758][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:02:12.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:12.801][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:12.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.820][private$selectFields]
biodb.TRACE[2025-04-05 16:02:12.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:12.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:12.823][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.832][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.841][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:02:12.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.881][private$selectFields]
biodb.TRACE[2025-04-05 16:02:12.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:12.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:12.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.893][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.898][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:12.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:12.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.930][private$selectFields]
biodb.TRACE[2025-04-05 16:02:12.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:12.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:12.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:12.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:12.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:12.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:12.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:12.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:02:12.961][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:12.962][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:12.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:12.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:12.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:12.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:12.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:12.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:12.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:12.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:12.978][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:12.979][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:12.981][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:13.423][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:13.774][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:13.779][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2025-04-05 16:02:13.787][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2025-04-05 16:02:13.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:13.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:13.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:13.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:13.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:13.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:13.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:13.827][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-04-05 16:02:13.829][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:13.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2025-04-05 16:02:13.833][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:13.835][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:13.836][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:13.838][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:13.839][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:13.840][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:13.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:13.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:13.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:13.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:13.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:13.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:13.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:13.855][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2025-04-05 16:02:13.858][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:13.859][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:13.860][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2025-04-05 16:02:14.218][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2025-04-05 16:02:14.575][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:14.579][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2025-04-05 16:02:14.587][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2025-04-05 16:02:14.592][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2025-04-05 16:02:14.596][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:14.598][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:14.601][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:14.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:14.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:14.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:14.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:14.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:14.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:14.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:14.627][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.640][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:14.641][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:14.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:14.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.650][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:14.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:14.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:14.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:14.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:14.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:14.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:14.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:14.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:14.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:14.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:14.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:14.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.680][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:14.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:14.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:14.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:14.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:14.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.695][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:14.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:14.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:14.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.703][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:14.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:14.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.707][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:14.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.711][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:14.712][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:14.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:14.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:14.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:14.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:14.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:14.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:14.766][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-04-05 16:02:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:14.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:14.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:14.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:14.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:14.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:14.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:14.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:14.788][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-04-05 16:02:14.789][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:14.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2025-04-05 16:02:14.791][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:14.792][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:14.794][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:14.795][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:14.796][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:14.796][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:14.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:14.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:14.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:14.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:14.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:14.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:14.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:14.809][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2025-04-05 16:02:14.811][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:14.812][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:14.813][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2025-04-05 16:02:15.171][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2025-04-05 16:02:15.530][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:15.533][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2025-04-05 16:02:15.536][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2025-04-05 16:02:15.538][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2025-04-05 16:02:15.540][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:15.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:15.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:15.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:15.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:15.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:15.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:15.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:15.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:15.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:15.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.576][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:15.578][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:15.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:15.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:15.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:15.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:15.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.596][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:15.597][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:15.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:15.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:15.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:15.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:15.613][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:15.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.616][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:15.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:15.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:15.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:15.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:15.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:15.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.631][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:15.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:15.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.639][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:15.640][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:15.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.643][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:15.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:15.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:15.656][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:15.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:15.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:15.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:15.701][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-04-05 16:02:15.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:15.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:15.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:15.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:15.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:15.717][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:15.718][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:15.720][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:16.076][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:16.426][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:16.431][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2025-04-05 16:02:16.439][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2025-04-05 16:02:16.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:16.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:16.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:16.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:16.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:16.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:16.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:16.468][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-04-05 16:02:16.470][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:16.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2025-04-05 16:02:16.476][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:16.478][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:16.479][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:16.481][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:16.483][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:16.484][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:16.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:16.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:16.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:16.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:16.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:16.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:16.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:16.501][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2025-04-05 16:02:16.505][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:16.506][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:16.507][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2025-04-05 16:02:16.885][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2025-04-05 16:02:17.325][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:17.332][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2025-04-05 16:02:17.341][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2025-04-05 16:02:17.348][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2025-04-05 16:02:17.351][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:17.355][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:17.358][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:17.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:17.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:17.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:17.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:17.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:17.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:17.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:17.388][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.400][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:17.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:17.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:17.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:17.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.410][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:17.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:17.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:17.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:17.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:17.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:17.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:17.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:17.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.459][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:17.460][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:17.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:17.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:17.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.467][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:17.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.471][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:17.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:17.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:17.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:17.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:17.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.493][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:17.494][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:17.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.501][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:17.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:17.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:17.550][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-04-05 16:02:17.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:17.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:17.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:17.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:17.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:17.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:17.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:17.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:17.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:17.573][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-04-05 16:02:17.574][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:17.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2025-04-05 16:02:17.577][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:17.578][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:17.579][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:17.580][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:17.581][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:17.582][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:17.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:17.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:17.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:17.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:17.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:17.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:17.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:17.594][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2025-04-05 16:02:17.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:17.598][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:17.599][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2025-04-05 16:02:17.947][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2025-04-05 16:02:18.307][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:18.312][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2025-04-05 16:02:18.319][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2025-04-05 16:02:18.325][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2025-04-05 16:02:18.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:18.345][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:18.347][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:18.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:18.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:18.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:18.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:18.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:18.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:18.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:18.370][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.381][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:18.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:18.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.390][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:18.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:18.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:18.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:18.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:18.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:18.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:18.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:18.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:18.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:18.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:18.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:18.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.423][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:18.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:18.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:18.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:18.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:18.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.438][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:18.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:18.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:18.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.446][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:18.447][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:18.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:18.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:18.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.454][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:18.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:18.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:18.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:18.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:18.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:18.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:18.500][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-04-05 16:02:18.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:18.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:18.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:18.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:18.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:18.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:18.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:18.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:18.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:18.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:18.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:18.527][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-04-05 16:02:18.528][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:18.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2025-04-05 16:02:18.531][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:18.532][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:18.533][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:18.534][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:18.535][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:18.536][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:18.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:18.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:18.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:18.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:18.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:18.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:18.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:18.548][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2025-04-05 16:02:18.550][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:18.551][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:18.552][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2025-04-05 16:02:18.911][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2025-04-05 16:02:19.263][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:19.268][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2025-04-05 16:02:19.275][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2025-04-05 16:02:19.281][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2025-04-05 16:02:19.284][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:19.287][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:19.289][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:19.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:19.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:19.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:19.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:19.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:19.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:19.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:19.316][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.328][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:19.330][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:19.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:19.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.339][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:19.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:19.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:19.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:19.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:19.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:19.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:19.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:19.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:19.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:19.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:19.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:19.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:19.365][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:19.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.368][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:19.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:19.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:19.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:19.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.384][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:19.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:19.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:19.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:19.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.392][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:19.393][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:19.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.399][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:19.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:19.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:19.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:19.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:19.453][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-04-05 16:02:19.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:19.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:19.488][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:19.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:19.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:19.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:19.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:19.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:19.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:19.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.529][private$selectFields]
biodb.TRACE[2025-04-05 16:02:19.530][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:19.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:19.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.540][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.541][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.546][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:02:19.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:19.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:19.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:19.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:19.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:19.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:19.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:19.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.578][private$selectFields]
biodb.TRACE[2025-04-05 16:02:19.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:19.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:19.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.595][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.600][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:02:19.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:19.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:19.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:19.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:19.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:19.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:19.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.632][private$selectFields]
biodb.TRACE[2025-04-05 16:02:19.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:19.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:19.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.644][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:19.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.648][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:19.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:19.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:19.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:19.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:02:19.662][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:19.663][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:19.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:19.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:19.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:19.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:19.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:19.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:19.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:19.676][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:19.679][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:19.680][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:19.682][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:20.058][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:20.409][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:20.414][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2025-04-05 16:02:20.422][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2025-04-05 16:02:20.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:20.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:20.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:20.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:20.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:20.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:20.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:20.451][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-04-05 16:02:20.453][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:20.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2025-04-05 16:02:20.459][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:20.461][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:20.463][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:20.464][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:20.466][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:20.467][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:20.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:20.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:20.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:20.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:20.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:20.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:20.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:20.484][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2025-04-05 16:02:20.487][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:20.488][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:20.490][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2025-04-05 16:02:20.844][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2025-04-05 16:02:21.201][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:21.206][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2025-04-05 16:02:21.213][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2025-04-05 16:02:21.219][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2025-04-05 16:02:21.222][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:21.225][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:21.227][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:21.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:21.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:21.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:21.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:21.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:21.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:21.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:21.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.278][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:21.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:21.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:21.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:21.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.287][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:21.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:21.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:21.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:21.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.303][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:21.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:21.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:21.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:21.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:21.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:21.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.315][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:21.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:21.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:21.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.331][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:21.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:21.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:21.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:21.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.339][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:21.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:21.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:21.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:21.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:21.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:21.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:21.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:21.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:21.393][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-04-05 16:02:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:21.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:21.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:21.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:21.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:21.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:21.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:21.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:21.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:21.415][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-04-05 16:02:21.416][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:21.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2025-04-05 16:02:21.418][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:21.420][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:21.421][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:21.422][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:21.422][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:21.423][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:21.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:21.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:21.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:21.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:21.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:21.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:21.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:21.584][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2025-04-05 16:02:21.586][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:21.587][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:21.588][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2025-04-05 16:02:21.951][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2025-04-05 16:02:22.303][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:22.308][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2025-04-05 16:02:22.315][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2025-04-05 16:02:22.321][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2025-04-05 16:02:22.324][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:22.327][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:22.329][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:22.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:22.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:22.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:22.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:22.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:22.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:22.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:22.356][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.368][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:22.370][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:22.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:22.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.379][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:22.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:22.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:22.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:22.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:22.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:22.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:22.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:22.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:22.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:22.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.404][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:22.405][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:22.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.408][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:22.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.411][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:22.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:22.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:22.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:22.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.423][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:22.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:22.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:22.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:22.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.431][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:22.432][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:22.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:22.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:22.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:22.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:22.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:22.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:22.484][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-04-05 16:02:22.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:22.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:22.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:22.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:22.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:22.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:22.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:22.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:22.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:22.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:22.513][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-04-05 16:02:22.514][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:22.515][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2025-04-05 16:02:22.516][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:22.517][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:22.518][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:22.519][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:22.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:22.521][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:22.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:22.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:22.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:22.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:22.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:22.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:22.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:22.533][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2025-04-05 16:02:22.535][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:22.536][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:22.537][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2025-04-05 16:02:22.935][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2025-04-05 16:02:23.288][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:23.293][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2025-04-05 16:02:23.300][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2025-04-05 16:02:23.306][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2025-04-05 16:02:23.309][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:23.311][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:23.314][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:23.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:23.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:23.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:23.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:23.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:23.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:23.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:23.340][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:23.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:23.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:23.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.363][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:23.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:23.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:23.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:23.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:23.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:23.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:23.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:23.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.388][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:23.389][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:23.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.392][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:23.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:23.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:23.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:23.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.407][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:23.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:23.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:23.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:23.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:23.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:23.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:23.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:23.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:23.475][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-04-05 16:02:23.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:23.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:23.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:23.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:23.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:23.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:23.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:23.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:23.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:23.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:23.496][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-04-05 16:02:23.497][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:23.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2025-04-05 16:02:23.500][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:23.501][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:23.502][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:23.503][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:23.504][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:23.505][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:23.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:23.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:23.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:23.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:23.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:23.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:23.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:23.516][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2025-04-05 16:02:23.519][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:23.520][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:23.521][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2025-04-05 16:02:23.874][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2025-04-05 16:02:24.228][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:24.233][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2025-04-05 16:02:24.240][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2025-04-05 16:02:24.246][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2025-04-05 16:02:24.249][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:24.252][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:24.254][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:24.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:24.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:24.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:24.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:24.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:24.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:24.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:24.280][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.293][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:24.295][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:24.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:24.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:24.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:24.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:24.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:24.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:24.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:24.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.329][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:24.330][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:24.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.333][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:24.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.337][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:24.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.348][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:24.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:24.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.356][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:24.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:24.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:24.372][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:24.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:24.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:24.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:24.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:24.416][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-04-05 16:02:24.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:24.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:24.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:24.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:24.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:24.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:24.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:24.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:24.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:24.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:24.437][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-04-05 16:02:24.438][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:24.439][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2025-04-05 16:02:24.441][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:24.442][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:24.443][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:24.444][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:24.444][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:24.445][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:24.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:24.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:24.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:24.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:24.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:24.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:24.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:24.457][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2025-04-05 16:02:24.460][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:24.460][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:24.462][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2025-04-05 16:02:24.826][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2025-04-05 16:02:25.175][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:25.180][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2025-04-05 16:02:25.187][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2025-04-05 16:02:25.193][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2025-04-05 16:02:25.196][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:25.199][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:25.201][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:25.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:25.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:25.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:25.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:25.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:25.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:25.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:25.228][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.241][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:25.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:25.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.251][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:25.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:25.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:25.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:25.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:25.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:25.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:25.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:25.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:25.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:25.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:25.282][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:25.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.288][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:25.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:25.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:25.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:25.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:25.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:25.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.304][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:25.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:25.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:25.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:25.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.311][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:25.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:25.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:25.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:25.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.319][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:25.320][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:25.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:25.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:25.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:25.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:25.364][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-04-05 16:02:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:25.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:25.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:25.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:25.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:25.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:25.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:25.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:25.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:25.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:25.385][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-04-05 16:02:25.386][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:25.387][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2025-04-05 16:02:25.389][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:25.390][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:25.391][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:25.391][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:25.392][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:25.393][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:25.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:25.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:25.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:25.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:25.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:25.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:25.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:25.405][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2025-04-05 16:02:25.408][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:25.409][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:25.410][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2025-04-05 16:02:25.762][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2025-04-05 16:02:26.113][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:26.117][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2025-04-05 16:02:26.123][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2025-04-05 16:02:26.127][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2025-04-05 16:02:26.130][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:26.132][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:26.134][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:26.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:26.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:26.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:26.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:26.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.190][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:26.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:26.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:26.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:26.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:26.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:26.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:26.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:26.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.214][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:26.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:26.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.218][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:26.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.222][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:26.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:26.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:26.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:26.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.234][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:26.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:26.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:26.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.242][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:26.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:26.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.250][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:26.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:26.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:26.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:26.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.297][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-04-05 16:02:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:26.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:26.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:26.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:26.320][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-04-05 16:02:26.321][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:26.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2025-04-05 16:02:26.324][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:26.325][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:26.327][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:26.328][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:26.329][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:26.330][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:26.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:26.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:26.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:26.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:26.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:26.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:26.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:26.343][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2025-04-05 16:02:26.346][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:26.347][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:26.348][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2025-04-05 16:02:26.704][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2025-04-05 16:02:27.057][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:27.062][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2025-04-05 16:02:27.084][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2025-04-05 16:02:27.090][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2025-04-05 16:02:27.093][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:27.096][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:27.098][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:27.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:27.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:27.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:27.120][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.131][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:27.132][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:27.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:27.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:27.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:27.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:27.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:27.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:27.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:27.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:27.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:27.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:27.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.165][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:27.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:27.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.169][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:27.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.185][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:27.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:27.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:27.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:27.194][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:27.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.201][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:27.202][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:27.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:27.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:27.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:27.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:27.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:27.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:27.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:27.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:27.249][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-04-05 16:02:27.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:27.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:27.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:27.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:27.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:27.272][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-04-05 16:02:27.273][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:27.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2025-04-05 16:02:27.281][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:27.282][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:27.283][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:27.284][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:27.285][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:27.286][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:27.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:27.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:27.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:27.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:27.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:27.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:27.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:27.299][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2025-04-05 16:02:27.301][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:27.302][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:27.304][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2025-04-05 16:02:27.708][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2025-04-05 16:02:28.066][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:28.071][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2025-04-05 16:02:28.078][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2025-04-05 16:02:28.084][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2025-04-05 16:02:28.087][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:28.090][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:28.092][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:28.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:28.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:28.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:28.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:28.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:28.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:28.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:28.119][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.132][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:28.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:28.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:28.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:28.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.142][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:28.143][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:28.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:28.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:28.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:28.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:28.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:28.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:28.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:28.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:28.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:28.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:28.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.172][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:28.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:28.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.183][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:28.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:28.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:28.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:28.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:28.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:28.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:28.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:28.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:28.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:28.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:28.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:28.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:28.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:28.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:28.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:28.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:28.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:28.288][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-04-05 16:02:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:28.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:28.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:28.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:28.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:28.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:28.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:28.302][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:28.306][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:28.307][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:28.309][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:28.655][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:29.006][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:29.011][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2025-04-05 16:02:29.020][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2025-04-05 16:02:29.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:29.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:29.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:29.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:29.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:29.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:29.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:29.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:29.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:29.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:29.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:29.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:29.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:29.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:29.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:29.085][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-04-05 16:02:29.087][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:29.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2025-04-05 16:02:29.090][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:29.091][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:29.092][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:29.093][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:29.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:29.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:29.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:29.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:29.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:29.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:29.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:29.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:29.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:29.108][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2025-04-05 16:02:29.111][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:29.112][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:29.113][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2025-04-05 16:02:29.470][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2025-04-05 16:02:29.834][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:29.836][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2025-04-05 16:02:29.840][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2025-04-05 16:02:29.842][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2025-04-05 16:02:29.844][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:29.845][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:29.846][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:29.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:29.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:29.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:29.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:29.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:29.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:29.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:29.860][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.873][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:29.874][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:29.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:29.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:29.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:29.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:29.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:29.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:29.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:29.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:29.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:29.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.907][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:29.907][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:29.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.910][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:29.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.928][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:29.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.935][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:29.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:29.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:29.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:29.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.943][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:29.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:29.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.951][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:29.952][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:29.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:29.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:29.995][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-04-05 16:02:29.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:30.016][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-04-05 16:02:30.017][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:30.019][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2025-04-05 16:02:30.020][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:30.021][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:30.022][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:30.023][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:30.024][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:30.025][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:30.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:30.036][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2025-04-05 16:02:30.039][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:30.040][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:30.041][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2025-04-05 16:02:30.393][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2025-04-05 16:02:30.744][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:30.746][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2025-04-05 16:02:30.749][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2025-04-05 16:02:30.751][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2025-04-05 16:02:30.753][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:30.754][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:30.755][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:30.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.775][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:30.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:30.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:30.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:30.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:30.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:30.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:30.798][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:30.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:30.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:30.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:30.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:30.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:30.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.816][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:30.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.831][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:30.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:30.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:30.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.839][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:30.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:30.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:30.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:30.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:30.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.891][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-04-05 16:02:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:30.903][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:30.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:30.922][private$selectFields]
biodb.TRACE[2025-04-05 16:02:30.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:30.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:30.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:30.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:30.934][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:30.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.939][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:30.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:02:30.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:30.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:30.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:30.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:30.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:30.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:30.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:30.973][private$selectFields]
biodb.TRACE[2025-04-05 16:02:30.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:30.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:30.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:30.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:30.985][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:30.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.990][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:30.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:02:31.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.020][private$selectFields]
biodb.TRACE[2025-04-05 16:02:31.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:31.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:31.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.032][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.037][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:31.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:02:31.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:31.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:31.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:31.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:31.169][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:31.170][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:02:31.171][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:31.173][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:02:31.176][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:31.178][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:31.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:02:31.181][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:31.182][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:02:31.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:31.246][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:31.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.270][private$selectFields]
biodb.TRACE[2025-04-05 16:02:31.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:31.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:31.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.281][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.286][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:31.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:02:31.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.346][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.347][private$selectFields]
biodb.TRACE[2025-04-05 16:02:31.348][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:31.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:31.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.372][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:31.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:31.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.403][private$selectFields]
biodb.TRACE[2025-04-05 16:02:31.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:31.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:31.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.419][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:31.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.423][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:31.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:31.436][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:02:31.436][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:31.437][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:31.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:31.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:31.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:31.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:31.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:31.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:31.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:31.450][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:31.468][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:31.469][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:31.471][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:31.836][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:32.184][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:32.188][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2025-04-05 16:02:32.194][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2025-04-05 16:02:32.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:32.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:32.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:32.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:32.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:32.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:32.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:32.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:32.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:32.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:32.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:32.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:32.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:32.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:32.248][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-04-05 16:02:32.249][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:32.251][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2025-04-05 16:02:32.252][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:32.254][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:32.255][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:32.256][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:32.257][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:32.258][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:32.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:32.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:32.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:32.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:32.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:32.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:32.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:32.271][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2025-04-05 16:02:32.274][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:32.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:32.276][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2025-04-05 16:02:32.633][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2025-04-05 16:02:32.984][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:32.988][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2025-04-05 16:02:32.993][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2025-04-05 16:02:32.997][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2025-04-05 16:02:33.000][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:33.002][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:33.004][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:33.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:33.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:33.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:33.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:33.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:33.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:33.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:33.040][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.050][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:33.051][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:33.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:33.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:33.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.059][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:33.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:33.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:33.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:33.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.074][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:33.075][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:33.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:33.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:33.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.086][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:33.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.090][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.101][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:33.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:33.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.109][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:33.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:33.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:33.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:33.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:33.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:33.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:33.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:33.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:33.160][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-04-05 16:02:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:33.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:33.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:33.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:33.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:33.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:33.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:33.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:33.182][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-04-05 16:02:33.183][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:33.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2025-04-05 16:02:33.186][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:33.187][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:33.188][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:33.189][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:33.190][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:33.191][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:33.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:33.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:33.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:33.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:33.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:33.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:33.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:33.206][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2025-04-05 16:02:33.208][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:33.209][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:33.211][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2025-04-05 16:02:33.572][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2025-04-05 16:02:33.923][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:33.927][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2025-04-05 16:02:33.934][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2025-04-05 16:02:33.940][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2025-04-05 16:02:33.943][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:33.945][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:33.948][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:33.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:33.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:33.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:33.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:33.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:33.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:33.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:33.974][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.986][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:33.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:33.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:33.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:33.997][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:33.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:33.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:34.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:34.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:34.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:34.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:34.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:34.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.025][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:34.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:34.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:34.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.040][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:34.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:34.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.048][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:34.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:34.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:34.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:34.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.056][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:34.057][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:34.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:34.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:34.100][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-04-05 16:02:34.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:34.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:34.120][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:34.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:34.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:34.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:34.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:34.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:34.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:34.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.138][private$selectFields]
biodb.TRACE[2025-04-05 16:02:34.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:34.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:34.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.159][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.163][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:02:34.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:34.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:34.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:34.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:34.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:34.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:34.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.194][private$selectFields]
biodb.TRACE[2025-04-05 16:02:34.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:34.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:34.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.205][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.210][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:34.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:02:34.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:34.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:34.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:34.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:34.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:34.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:34.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.241][private$selectFields]
biodb.TRACE[2025-04-05 16:02:34.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:34.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:34.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.253][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:34.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.257][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:34.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:34.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:34.273][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:02:34.274][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:34.275][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:34.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:34.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:34.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:34.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:34.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:34.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:34.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:34.287][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:34.306][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:34.307][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:34.308][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:34.657][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:35.009][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:35.013][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2025-04-05 16:02:35.021][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2025-04-05 16:02:35.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:35.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:35.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:35.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:35.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:35.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:35.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:35.050][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-04-05 16:02:35.052][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:35.055][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2025-04-05 16:02:35.057][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:35.059][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:35.061][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:35.063][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:35.064][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:35.066][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:35.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:35.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:35.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:35.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:35.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:35.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:35.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:35.083][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2025-04-05 16:02:35.086][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:35.087][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:35.088][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2025-04-05 16:02:35.444][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2025-04-05 16:02:35.799][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:35.803][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2025-04-05 16:02:35.810][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2025-04-05 16:02:35.816][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2025-04-05 16:02:35.819][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:35.821][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:35.824][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:35.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:35.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:35.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:35.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:35.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:35.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:35.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:35.850][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.863][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:35.864][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:35.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:35.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.873][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:35.874][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:35.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:35.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:35.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:35.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:35.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:35.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:35.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:35.899][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:35.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:35.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:35.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.916][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:35.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.931][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:35.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:35.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:35.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:35.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.939][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:35.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:35.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:35.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:35.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:35.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:35.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:35.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:35.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:35.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:35.991][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-04-05 16:02:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:35.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:35.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:36.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:36.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:36.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:36.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:36.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:36.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:36.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:36.012][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-04-05 16:02:36.013][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:36.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2025-04-05 16:02:36.016][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:36.017][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:36.018][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:36.019][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:36.020][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:36.020][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:36.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:36.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:36.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:36.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:36.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:36.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:36.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:36.032][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2025-04-05 16:02:36.035][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:36.036][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:36.037][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2025-04-05 16:02:36.397][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2025-04-05 16:02:36.760][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:36.765][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2025-04-05 16:02:36.772][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2025-04-05 16:02:36.777][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2025-04-05 16:02:36.781][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:36.783][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:36.786][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:36.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:36.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:36.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:36.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:36.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:36.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:36.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:36.812][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.834][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:36.835][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:36.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:36.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:36.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:36.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:36.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:36.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:36.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:36.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:36.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:36.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.870][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:36.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.885][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:36.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:36.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.893][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:36.894][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:36.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:36.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:36.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:36.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:36.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:36.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:36.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:36.945][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-04-05 16:02:36.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:36.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:36.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:36.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:36.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:36.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:36.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:36.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:36.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:36.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:36.966][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-04-05 16:02:36.967][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:36.969][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2025-04-05 16:02:36.970][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:36.971][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:36.972][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:36.973][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:36.974][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:36.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:36.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:36.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:36.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:36.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:36.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:36.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:36.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:36.986][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2025-04-05 16:02:36.989][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:36.990][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:36.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2025-04-05 16:02:37.356][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2025-04-05 16:02:37.712][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:37.717][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2025-04-05 16:02:37.724][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2025-04-05 16:02:37.729][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2025-04-05 16:02:37.732][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:37.735][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:37.738][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:37.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:37.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:37.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:37.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:37.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:37.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:37.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:37.764][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.776][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:37.778][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:37.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:37.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.787][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:37.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:37.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:37.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:37.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:37.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:37.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:37.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.804][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:37.805][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:37.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:37.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:37.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:37.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.816][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:37.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:37.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:37.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.831][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:37.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:37.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:37.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.838][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:37.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:37.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:37.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:37.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:37.890][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-04-05 16:02:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:37.903][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:37.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:37.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:37.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:37.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:37.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:37.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:37.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:37.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.929][private$selectFields]
biodb.TRACE[2025-04-05 16:02:37.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:37.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:37.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.941][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:02:37.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:37.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:37.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:37.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:37.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:37.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:37.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.976][private$selectFields]
biodb.TRACE[2025-04-05 16:02:37.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:37.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:37.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.987][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:37.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:37.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:37.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:02:38.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.022][private$selectFields]
biodb.TRACE[2025-04-05 16:02:38.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:38.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:38.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.034][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-05 16:02:38.052][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:38.053][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:38.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:38.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:38.078][biodb::testThat]
biodb.INFO [2025-04-05 16:02:38.079][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-04-05 16:02:38.080][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:38.081][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:38.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.087][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:38.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:38.152][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:38.155][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:38.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:02:38.157][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:38.158][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:02:38.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.181][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:38.184][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:38.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:02:38.187][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:38.188][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:02:38.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.231][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:38.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.254][private$selectFields]
biodb.TRACE[2025-04-05 16:02:38.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:38.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:38.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.274][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.279][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:02:38.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.309][private$selectFields]
biodb.TRACE[2025-04-05 16:02:38.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:38.311][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:38.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.321][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.326][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:38.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:38.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.357][private$selectFields]
biodb.TRACE[2025-04-05 16:02:38.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:38.358][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:38.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.369][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:02:38.387][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:38.388][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:38.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:38.404][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:38.422][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:38.424][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:02:38.425][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:38.426][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:02:38.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.469][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:38.472][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:38.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:02:38.474][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:38.475][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:02:38.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.538][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:38.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.561][private$selectFields]
biodb.TRACE[2025-04-05 16:02:38.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:38.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:38.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.577][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:02:38.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.608][private$selectFields]
biodb.TRACE[2025-04-05 16:02:38.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:38.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:38.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.628][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.632][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:02:38.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.663][private$selectFields]
biodb.TRACE[2025-04-05 16:02:38.664][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:38.665][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:38.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.675][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:38.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.679][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:38.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:02:38.693][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:38.694][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:38.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:38.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:38.729][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:38.730][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:02:38.731][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:38.732][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:02:38.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:38.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:38.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:38.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:38.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:38.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:38.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:38.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:38.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:38.799][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:38.800][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:38.802][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:39.156][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:39.686][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:39.691][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2025-04-05 16:02:39.699][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2025-04-05 16:02:39.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:39.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:39.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:39.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:39.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:39.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:39.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:39.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:39.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:39.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:39.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:39.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:39.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:39.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:39.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:39.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:39.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:39.763][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-04-05 16:02:39.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:39.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2025-04-05 16:02:39.767][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:39.768][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:39.769][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:39.770][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:39.771][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:39.772][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:39.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:39.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:39.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:39.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:39.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:39.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:39.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:39.792][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2025-04-05 16:02:39.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:39.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:39.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2025-04-05 16:02:40.154][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2025-04-05 16:02:40.517][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:40.520][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2025-04-05 16:02:40.523][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2025-04-05 16:02:40.526][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2025-04-05 16:02:40.527][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:40.529][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:40.530][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:40.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:40.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:40.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:40.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:40.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:40.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:40.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:40.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.553][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:40.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:40.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:40.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.561][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:40.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:40.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:40.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:40.571][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:40.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:40.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:40.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.585][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:40.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:40.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.593][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:40.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:40.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:40.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.619][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:40.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:40.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.628][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:40.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:40.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.637][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:40.638][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:40.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:40.709][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-04-05 16:02:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:40.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:40.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:40.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:40.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:40.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:40.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:40.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:40.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:40.733][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-04-05 16:02:40.734][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:40.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2025-04-05 16:02:40.737][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:40.738][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:40.739][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:40.740][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:40.741][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:40.742][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:40.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:40.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:40.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:40.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:40.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:40.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:40.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:40.755][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2025-04-05 16:02:40.758][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:40.759][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:40.760][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2025-04-05 16:02:41.125][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2025-04-05 16:02:41.482][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:41.487][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2025-04-05 16:02:41.495][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2025-04-05 16:02:41.500][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2025-04-05 16:02:41.504][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:41.507][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:41.510][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:41.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:41.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:41.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:41.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:41.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:41.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:41.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:41.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.550][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:41.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:41.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.560][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:41.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:41.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:41.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:41.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:41.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:41.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:41.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.585][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:41.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:41.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.592][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:41.593][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:41.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:41.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:41.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:41.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:41.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.616][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:41.617][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:41.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:41.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.624][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:41.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:41.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:41.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:41.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:41.677][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-04-05 16:02:41.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:41.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:41.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:41.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:41.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:41.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:41.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:41.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:41.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:41.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:41.698][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-04-05 16:02:41.699][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:41.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2025-04-05 16:02:41.702][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:41.703][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:41.704][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:41.705][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:41.706][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:41.707][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:41.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:41.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:41.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:41.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:41.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:41.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:41.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:41.718][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2025-04-05 16:02:41.721][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:41.722][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:41.723][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2025-04-05 16:02:42.083][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2025-04-05 16:02:42.437][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:42.442][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2025-04-05 16:02:42.449][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2025-04-05 16:02:42.455][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2025-04-05 16:02:42.458][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:42.460][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:42.463][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:42.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.501][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:42.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:42.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:42.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.512][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:42.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:42.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:42.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:42.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:42.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:42.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:42.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:42.538][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:42.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:42.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.545][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:42.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.556][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.568][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:42.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:42.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:42.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.575][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:42.576][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:42.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:42.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:42.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:42.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:42.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:42.627][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-04-05 16:02:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:42.639][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:42.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.658][private$selectFields]
biodb.TRACE[2025-04-05 16:02:42.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:42.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:42.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.679][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.684][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:02:42.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.719][private$selectFields]
biodb.TRACE[2025-04-05 16:02:42.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:42.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:42.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.731][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.736][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-04-05 16:02:42.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.766][private$selectFields]
biodb.TRACE[2025-04-05 16:02:42.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:42.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:42.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.778][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.782][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-04-05 16:02:42.795][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:42.796][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:42.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:42.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:42.884][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:42.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:02:42.887][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:42.888][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:02:42.891][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:42.893][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:42.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:02:42.896][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:42.897][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:02:42.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:42.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:42.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:42.960][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:42.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:42.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:42.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:42.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:42.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:42.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:42.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.979][private$selectFields]
biodb.TRACE[2025-04-05 16:02:42.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:42.980][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:42.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:42.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:42.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:42.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:42.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.004][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:43.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:02:43.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.039][private$selectFields]
biodb.TRACE[2025-04-05 16:02:43.040][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:43.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:43.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.051][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:43.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:43.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.087][private$selectFields]
biodb.TRACE[2025-04-05 16:02:43.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:43.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:43.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.098][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:43.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.103][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:43.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:02:43.116][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:43.117][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:43.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:43.130][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:43.149][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:43.150][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:43.152][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:43.500][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:43.864][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:43.868][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2025-04-05 16:02:43.877][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2025-04-05 16:02:43.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:43.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:43.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:43.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:43.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:43.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:43.968][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-04-05 16:02:43.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:43.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2025-04-05 16:02:43.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:43.973][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:43.974][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:43.975][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:43.976][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:43.976][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:43.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:43.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:43.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:43.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:43.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:43.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:43.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:43.988][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2025-04-05 16:02:43.991][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:43.992][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:43.993][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2025-04-05 16:02:44.358][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2025-04-05 16:02:44.712][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:44.717][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2025-04-05 16:02:44.724][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2025-04-05 16:02:44.729][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2025-04-05 16:02:44.732][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:44.735][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:44.737][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:44.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:44.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:44.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:44.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:44.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:44.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:44.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:44.764][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.776][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:44.778][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:44.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.787][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:44.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:44.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:44.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:44.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.804][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.805][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:44.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:44.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:44.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.820][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:44.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.835][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:44.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:44.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.851][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:44.852][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:44.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:44.859][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:44.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:44.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:44.903][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-04-05 16:02:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:44.915][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:44.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:44.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:44.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:44.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:44.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:44.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:44.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:44.934][private$selectFields]
biodb.TRACE[2025-04-05 16:02:44.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:44.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:44.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:44.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:44.946][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:44.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.950][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:44.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:02:44.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:44.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:44.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:44.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:44.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:44.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:44.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:44.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:44.981][private$selectFields]
biodb.TRACE[2025-04-05 16:02:44.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:44.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:44.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:44.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:44.994][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:44.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:44.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:44.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:44.998][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:44.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:02:45.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:45.033][private$selectFields]
biodb.TRACE[2025-04-05 16:02:45.034][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:45.035][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:45.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:45.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:45.045][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:45.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.050][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-04-05 16:02:45.063][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:45.064][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:45.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:45.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:45.079][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:45.080][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:02:45.082][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:45.083][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:02:45.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:45.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:45.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:45.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:45.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:45.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:45.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:45.156][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-04-05 16:02:45.157][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:45.159][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2025-04-05 16:02:45.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:45.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:45.166][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:45.167][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:45.168][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:45.169][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:45.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:45.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:45.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:45.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:45.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:45.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:45.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:45.181][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2025-04-05 16:02:45.183][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:45.184][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:45.185][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2025-04-05 16:02:45.541][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2025-04-05 16:02:46.167][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:46.171][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2025-04-05 16:02:46.178][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2025-04-05 16:02:46.184][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2025-04-05 16:02:46.187][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:46.189][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:46.192][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:46.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:46.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:46.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:46.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:46.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:46.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:46.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:46.218][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.231][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:46.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:46.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:46.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:46.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.241][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:46.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:46.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:46.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:46.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:46.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:46.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:46.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:46.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:46.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.266][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:46.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:46.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.270][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:46.271][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:46.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:46.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.279][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.285][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:46.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:46.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:46.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.293][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:46.294][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:46.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:46.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:46.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:46.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:46.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:46.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:46.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:46.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:46.353][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-04-05 16:02:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:46.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:46.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:46.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:46.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:46.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:46.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:46.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:46.375][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-04-05 16:02:46.376][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:46.377][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2025-04-05 16:02:46.378][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:46.379][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:46.380][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:46.381][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:46.382][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:46.383][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:46.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:46.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:46.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:46.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:46.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:46.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:46.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:46.395][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2025-04-05 16:02:46.397][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:46.398][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:46.399][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2025-04-05 16:02:46.764][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2025-04-05 16:02:47.125][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:47.130][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2025-04-05 16:02:47.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2025-04-05 16:02:47.142][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2025-04-05 16:02:47.146][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:47.148][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:47.151][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:47.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:47.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:47.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:47.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:47.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:47.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:47.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:47.177][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.179][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.190][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:47.191][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:47.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:47.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:47.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.200][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:47.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:47.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:47.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:47.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:47.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:47.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:47.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:47.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:47.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:47.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:47.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.229][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:47.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:47.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:47.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.247][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:47.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:47.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.255][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:47.256][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:47.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:47.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:47.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:47.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:47.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:47.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:47.315][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-04-05 16:02:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:47.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:47.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:47.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:47.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:47.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:47.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:47.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:47.337][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-04-05 16:02:47.338][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:47.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2025-04-05 16:02:47.340][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:47.341][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:47.342][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:47.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:47.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:47.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:47.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:47.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:47.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:47.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:47.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:47.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:47.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:47.357][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2025-04-05 16:02:47.359][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:47.360][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:47.361][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2025-04-05 16:02:47.729][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2025-04-05 16:02:48.165][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:48.169][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2025-04-05 16:02:48.176][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2025-04-05 16:02:48.182][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2025-04-05 16:02:48.185][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:48.187][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:48.190][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:48.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:48.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:48.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:48.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:48.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:48.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:48.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:48.216][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.229][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:48.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:48.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:48.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:48.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:48.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:48.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:48.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:48.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:48.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:48.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:48.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:48.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:48.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:48.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:48.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.280][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:48.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:48.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:48.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:48.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.296][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:48.297][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:48.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:48.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.303][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:48.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:48.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.311][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:48.312][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:48.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:48.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:48.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:48.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:48.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:48.355][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-04-05 16:02:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:48.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:48.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:48.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:48.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:48.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:48.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:48.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:48.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:48.377][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-04-05 16:02:48.378][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:48.379][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2025-04-05 16:02:48.381][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:48.382][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:48.383][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:48.384][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:48.385][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:48.385][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:48.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:48.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:48.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:48.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:48.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:48.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:48.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:48.397][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2025-04-05 16:02:48.400][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:48.401][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:48.402][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2025-04-05 16:02:48.775][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2025-04-05 16:02:49.135][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:49.142][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2025-04-05 16:02:49.150][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2025-04-05 16:02:49.156][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2025-04-05 16:02:49.160][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:49.163][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:49.166][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:49.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:49.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:49.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:49.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.241][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:49.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:49.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:49.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:49.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:49.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:49.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:49.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:49.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:49.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:49.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.269][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:49.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:49.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.273][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:49.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:49.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.285][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:49.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:49.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:49.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:49.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.293][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:49.294][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:49.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.297][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:49.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:49.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:49.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:49.349][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-04-05 16:02:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:49.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:49.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:49.372][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-04-05 16:02:49.373][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:49.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2025-04-05 16:02:49.376][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:49.377][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:49.378][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:49.379][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:49.380][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:49.381][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:49.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:49.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:49.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:49.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:49.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:49.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:49.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:49.393][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2025-04-05 16:02:49.401][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:49.401][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:49.403][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2025-04-05 16:02:49.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2025-04-05 16:02:50.124][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:50.127][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2025-04-05 16:02:50.133][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2025-04-05 16:02:50.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2025-04-05 16:02:50.139][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:50.141][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:50.143][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:50.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:50.165][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.177][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:50.179][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:50.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.188][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:50.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:50.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:50.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:50.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:50.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:50.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.213][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:50.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:50.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.217][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:50.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:50.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.233][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:50.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:50.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:50.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:50.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.241][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:50.242][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:50.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:50.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:50.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:50.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:50.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:50.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:50.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:50.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:50.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:50.298][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-04-05 16:02:50.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:50.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:50.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:50.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:50.329][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-04-05 16:02:50.330][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:50.331][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2025-04-05 16:02:50.333][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:50.334][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:50.335][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:50.336][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:50.337][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:50.337][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:50.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:50.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:50.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:50.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:50.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:50.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:50.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:50.349][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2025-04-05 16:02:50.352][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:50.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:50.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2025-04-05 16:02:50.718][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2025-04-05 16:02:51.078][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:51.083][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2025-04-05 16:02:51.090][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2025-04-05 16:02:51.095][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2025-04-05 16:02:51.098][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:51.101][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:51.104][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:51.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:51.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:51.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:51.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:51.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:51.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:51.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:51.130][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.142][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:51.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:51.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.153][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:51.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:51.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:51.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:51.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:51.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:51.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:51.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:51.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:51.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:51.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:51.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:51.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:51.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:51.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:51.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.197][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:51.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:51.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:51.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.205][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:51.206][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:51.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.213][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:51.214][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:51.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:51.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:51.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:51.266][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-04-05 16:02:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:51.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:51.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:51.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:51.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:51.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:51.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:51.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:51.288][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-04-05 16:02:51.289][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:51.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2025-04-05 16:02:51.291][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:51.292][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:51.293][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:51.294][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:51.295][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:51.296][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:51.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:51.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:51.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:51.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:51.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:51.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:51.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:51.308][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2025-04-05 16:02:51.310][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:51.311][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:51.312][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2025-04-05 16:02:51.676][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2025-04-05 16:02:52.031][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:52.036][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2025-04-05 16:02:52.043][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2025-04-05 16:02:52.048][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2025-04-05 16:02:52.051][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:52.054][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:52.057][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:52.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.082][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:52.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:52.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.106][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:52.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:52.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:52.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.115][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:52.116][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:52.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:52.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:52.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:52.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:52.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.131][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:52.132][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:52.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.135][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:52.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.139][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.150][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:52.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:52.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.166][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:52.167][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:52.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.170][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:52.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:52.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:52.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:52.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:52.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:52.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:52.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.218][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-04-05 16:02:52.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:52.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.230][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:52.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.249][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.270][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.274][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:52.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:02:52.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.306][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.307][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.308][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.322][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-04-05 16:02:52.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.358][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.359][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.360][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.374][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:52.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-04-05 16:02:52.387][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:52.388][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:52.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:52.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:52.409][biodb::testThat]
biodb.INFO [2025-04-05 16:02:52.410][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-04-05 16:02:52.411][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:52.412][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:52.415][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.418][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:52.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:52.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:52.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:52.490][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:52.508][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:52.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:02:52.511][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:52.512][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:02:52.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:52.537][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:52.539][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:02:52.540][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:52.541][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:02:52.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.584][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:52.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.603][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.604][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.605][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.605][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.615][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.619][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:02:52.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.655][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.667][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.672][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:52.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.702][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.704][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.714][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.719][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:52.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:02:52.732][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:52.733][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:52.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:52.746][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:52.749][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:52.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:02:52.751][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:52.752][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:02:52.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.802][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:52.804][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:52.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:02:52.807][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:52.808][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:02:52.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:52.871][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:52.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.890][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.891][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.892][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.902][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.907][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:02:52.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.938][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.955][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.960][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:02:52.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:52.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:52.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:52.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:52.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:52.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:52.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:52.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.991][private$selectFields]
biodb.TRACE[2025-04-05 16:02:52.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:52.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:52.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:52.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:52.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:52.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:52.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.002][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.007][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:02:53.020][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:53.021][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:53.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:53.034][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:53.037][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:53.038][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:02:53.039][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:53.040][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:02:53.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.210][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:53.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:53.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:02:53.215][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:53.216][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:02:53.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.285][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:53.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.303][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.315][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.320][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:02:53.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.350][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.353][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.375][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:02:53.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.406][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.418][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.427][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:02:53.440][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:53.441][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:53.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:53.515][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:53.534][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:53.535][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:02:53.536][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:53.538][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:02:53.541][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:53.543][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:53.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:02:53.546][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:53.547][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:02:53.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.617][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:53.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.636][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.637][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.639][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.648][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.653][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:02:53.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.684][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.695][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.700][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:02:53.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.736][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.737][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.748][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.752][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.765][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:02:53.765][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:53.766][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:53.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:53.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:53.782][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:53.783][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:02:53.784][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:53.785][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:02:53.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:53.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:53.849][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:53.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.868][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.880][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.884][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.901][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:02:53.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.920][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.940][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:02:53.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:53.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:53.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:53.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:53.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:53.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:53.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.975][private$selectFields]
biodb.TRACE[2025-04-05 16:02:53.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:53.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:53.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.987][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:53.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:53.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:02:54.005][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:54.006][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:54.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:54.019][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:54.043][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:02:54.044][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:02:54.046][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:02:54.047][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:02:54.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:54.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:54.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:54.111][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:54.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.130][private$selectFields]
biodb.TRACE[2025-04-05 16:02:54.131][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:54.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:54.133][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.151][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:54.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:02:54.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:54.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.187][private$selectFields]
biodb.TRACE[2025-04-05 16:02:54.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:54.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:54.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.204][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.209][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:54.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:02:54.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.240][private$selectFields]
biodb.TRACE[2025-04-05 16:02:54.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:54.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:54.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.251][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:54.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.256][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:54.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:54.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.268][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-05 16:02:54.269][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:54.270][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:02:54.286][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.290][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:54.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:54.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:02:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.299][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:54.300][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:54.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.304][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:54.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.306][ef$get] fields variable is a list.
biodb.INFO [2025-04-05 16:02:54.307][biodb::testThat]
biodb.INFO [2025-04-05 16:02:54.308][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-04-05 16:02:54.309][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:02:54.310][biodb::testThat]
biodb.TRACE[2025-04-05 16:02:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:02:54.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:02:54.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:54.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:54.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:54.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:54.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:54.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:54.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:54.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:54.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:54.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:54.387][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:54.406][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:54.406][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:54.408][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:54.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:02:55.299][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:55.304][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2025-04-05 16:02:55.312][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2025-04-05 16:02:55.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:55.345][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-04-05 16:02:55.347][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:55.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2025-04-05 16:02:55.351][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:55.353][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:55.355][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:55.357][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:55.358][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:55.359][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:55.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:55.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:55.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:55.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:55.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:55.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:55.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:55.375][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2025-04-05 16:02:55.378][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:55.379][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:55.381][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2025-04-05 16:02:55.735][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2025-04-05 16:02:56.089][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:56.091][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2025-04-05 16:02:56.094][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2025-04-05 16:02:56.097][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2025-04-05 16:02:56.098][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:56.100][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:56.101][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:56.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:56.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:56.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:56.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:56.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:56.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:56.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:56.114][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.122][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:56.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:56.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:56.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:56.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.131][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:56.132][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:56.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:56.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:56.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:56.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:56.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:56.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:56.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:56.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:56.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:56.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:56.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.166][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:56.167][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:56.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.173][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:56.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:56.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:56.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:56.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.189][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:56.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:56.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:56.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:56.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.196][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:56.197][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:56.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.200][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:56.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:56.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.204][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:56.205][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:56.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:56.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:56.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:56.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:56.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:56.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:56.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:56.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:56.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:56.248][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-04-05 16:02:56.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:56.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:56.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:56.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:56.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:56.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:56.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:56.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:56.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:56.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:56.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:56.270][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-04-05 16:02:56.271][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:56.272][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2025-04-05 16:02:56.274][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:56.275][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:56.276][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:56.277][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:56.278][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:56.279][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:56.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:56.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:56.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:56.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:56.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:56.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:56.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:56.291][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2025-04-05 16:02:56.293][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:56.294][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:56.295][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2025-04-05 16:02:56.657][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2025-04-05 16:02:57.015][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:57.019][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2025-04-05 16:02:57.040][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2025-04-05 16:02:57.046][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2025-04-05 16:02:57.049][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:57.052][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:57.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:57.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:57.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:57.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:57.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:57.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:57.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:57.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:57.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.087][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:57.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:57.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.097][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:57.098][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:57.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:57.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:57.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:57.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:57.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:57.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:57.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:57.122][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:57.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.125][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:57.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.129][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:57.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.133][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:57.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:57.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:57.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:57.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.144][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:57.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:57.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:57.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:57.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.152][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:57.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:57.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:57.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:57.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:57.205][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-04-05 16:02:57.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:57.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:57.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:57.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:57.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:57.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:57.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:57.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:57.234][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-04-05 16:02:57.235][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:57.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2025-04-05 16:02:57.238][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:57.239][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:57.240][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:57.241][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:57.242][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:57.243][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:57.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:57.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:57.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:57.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:57.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:57.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:57.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:57.254][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2025-04-05 16:02:57.257][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:57.257][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:57.259][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2025-04-05 16:02:57.621][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2025-04-05 16:02:57.992][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:57.997][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2025-04-05 16:02:58.004][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2025-04-05 16:02:58.009][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2025-04-05 16:02:58.012][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:58.015][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:58.018][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:58.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:58.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:58.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:58.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:58.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:58.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:58.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:58.043][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.056][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:58.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:58.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:58.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:58.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.067][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:58.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:58.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:58.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:58.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:58.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:58.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:58.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:58.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:58.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:58.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.092][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:58.093][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:58.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.096][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:58.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.099][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:58.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:58.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:58.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.111][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:58.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:58.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.119][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:58.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:58.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:58.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:58.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:58.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:58.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:58.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:58.180][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-04-05 16:02:58.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:58.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:58.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:58.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:58.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:58.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:58.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:58.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:58.202][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-04-05 16:02:58.203][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:02:58.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2025-04-05 16:02:58.205][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:02:58.206][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:02:58.207][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:02:58.208][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:02:58.209][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:02:58.210][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:02:58.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:58.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:58.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:58.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:58.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:58.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:58.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:58.222][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2025-04-05 16:02:58.224][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:58.225][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:58.226][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2025-04-05 16:02:58.583][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2025-04-05 16:02:58.936][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:02:58.941][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2025-04-05 16:02:58.948][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2025-04-05 16:02:58.953][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2025-04-05 16:02:58.956][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:02:58.959][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:02:58.962][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:02:58.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:58.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:58.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:58.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:58.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:58.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:58.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:58.987][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:58.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:58.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:58.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:58.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.010][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:59.011][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:59.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:02:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:02:59.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.021][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:59.022][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:59.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:02:59.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:02:59.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:59.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:59.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:02:59.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:02:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:59.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:59.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:02:59.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:02:59.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:59.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:02:59.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.055][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:59.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.060][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:02:59.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:02:59.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.073][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:59.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:59.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:02:59.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:02:59.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.104][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:59.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:59.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:02:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:02:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:59.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:59.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:02:59.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:02:59.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:02:59.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:02:59.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:59.162][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-04-05 16:02:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:02:59.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:02:59.175][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:02:59.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.196][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.197][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.198][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.209][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.213][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:02:59.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.245][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.246][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.257][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.262][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-05 16:02:59.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:02:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.301][private$selectFields]
biodb.TRACE[2025-04-05 16:02:59.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:02:59.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:02:59.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.313][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:02:59.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.318][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:02:59.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:02:59.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:02:59.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:02:59.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-05 16:02:59.333][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:02:59.334][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:02:59.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:02:59.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:02:59.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:02:59.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:02:59.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:02:59.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:02:59.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:02:59.348][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:02:59.351][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:02:59.352][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:02:59.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:02:59.704][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:00.071][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:00.076][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2025-04-05 16:03:00.084][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2025-04-05 16:03:00.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:00.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:00.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:00.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:00.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:00.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:00.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:00.113][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-04-05 16:03:00.115][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:00.118][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2025-04-05 16:03:00.120][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:00.122][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:00.124][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:00.126][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:00.127][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:00.129][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:00.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:00.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:00.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:00.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:00.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:00.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:00.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:00.145][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2025-04-05 16:03:00.148][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:00.150][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:00.151][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2025-04-05 16:03:00.508][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2025-04-05 16:03:00.862][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:00.866][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2025-04-05 16:03:00.871][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2025-04-05 16:03:00.874][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2025-04-05 16:03:00.876][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:00.878][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:00.879][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:00.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:00.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:00.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:00.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:00.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:00.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:00.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:00.897][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:00.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:00.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:00.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:00.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:00.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:00.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.925][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.930][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:00.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:00.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:00.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:00.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:00.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:00.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:00.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:00.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:00.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:00.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:00.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:00.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:00.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:00.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.956][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:00.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:00.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.960][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:00.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:00.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:00.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.972][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:00.973][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:00.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:00.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:00.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.979][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:00.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:00.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.983][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:00.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:00.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.987][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:00.988][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:00.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:00.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:00.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:00.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:00.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:00.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:00.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:00.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:01.031][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-04-05 16:03:01.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:01.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:01.053][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-04-05 16:03:01.054][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:01.055][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2025-04-05 16:03:01.056][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:01.057][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:01.058][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:01.059][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:01.060][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:01.061][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:01.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:01.077][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2025-04-05 16:03:01.080][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:01.081][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:01.082][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2025-04-05 16:03:01.441][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2025-04-05 16:03:01.802][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:01.806][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2025-04-05 16:03:01.813][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2025-04-05 16:03:01.818][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2025-04-05 16:03:01.822][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:01.824][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:01.827][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:01.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:01.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:01.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:01.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:01.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:01.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:01.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:01.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.865][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:01.867][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:01.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:01.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:01.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.876][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:01.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:01.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:01.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:01.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:01.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:01.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:01.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:01.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:01.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:01.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:01.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:01.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:01.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.905][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:01.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.909][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:01.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:01.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:01.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:01.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:01.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:01.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.928][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:01.929][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:01.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.931][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:01.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:01.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.935][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:01.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:01.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:01.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:01.980][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-04-05 16:03:01.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:02.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:02.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:02.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:02.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:02.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:02.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:02.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:02.010][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-04-05 16:03:02.011][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:02.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2025-04-05 16:03:02.014][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:02.015][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:02.016][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:02.017][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:02.018][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:02.018][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:02.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:02.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:02.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:02.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:02.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:02.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:02.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:02.030][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2025-04-05 16:03:02.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:02.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:02.035][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2025-04-05 16:03:02.393][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2025-04-05 16:03:02.743][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:02.748][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2025-04-05 16:03:02.755][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2025-04-05 16:03:02.761][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2025-04-05 16:03:02.764][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:02.767][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:02.770][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:02.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:02.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:02.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:02.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:02.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:02.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:02.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:02.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.809][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:02.810][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:02.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:02.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:02.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.819][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:02.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:02.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:02.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:02.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:02.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:02.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:02.838][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:02.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:02.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:02.846][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:02.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.849][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:02.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:02.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.865][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:02.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:02.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:02.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:02.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.874][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:02.875][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:02.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:02.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:02.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:02.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:02.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:02.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:02.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:02.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:02.939][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-04-05 16:03:02.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:02.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:02.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:02.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:02.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:02.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:02.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:02.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:02.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:02.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:02.960][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-04-05 16:03:02.961][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:02.963][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2025-04-05 16:03:02.964][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:02.965][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:02.966][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:02.967][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:02.968][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:02.969][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:02.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:02.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:02.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:02.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:02.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:02.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:02.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:02.981][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2025-04-05 16:03:02.983][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:02.984][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:02.985][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2025-04-05 16:03:03.340][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2025-04-05 16:03:03.699][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:03.704][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2025-04-05 16:03:03.711][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2025-04-05 16:03:03.717][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2025-04-05 16:03:03.720][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:03.723][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:03.725][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:03.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:03.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:03.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:03.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:03.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:03.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:03.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:03.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.769][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:03.771][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:03.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:03.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:03.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.782][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:03.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:03.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:03.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:03.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:03.804][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:03.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:03.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.811][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:03.812][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:03.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.815][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:03.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.819][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:03.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:03.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:03.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:03.853][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:03.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:03.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:03.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:03.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:03.906][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-04-05 16:03:03.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:03.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:03.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:03.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:03.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:03.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:03.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:03.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:03.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:03.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:03.929][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-04-05 16:03:03.930][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:03.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2025-04-05 16:03:03.933][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:03.934][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:03.935][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:03.936][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:03.937][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:03.938][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:03.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:03.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:03.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:03.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:03.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:03.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:03.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:03.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2025-04-05 16:03:03.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:03.954][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:03.956][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2025-04-05 16:03:04.491][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2025-04-05 16:03:04.843][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:04.845][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2025-04-05 16:03:04.849][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2025-04-05 16:03:04.851][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2025-04-05 16:03:04.853][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:04.854][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:04.855][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:04.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:04.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:04.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:04.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:04.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:04.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:04.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:04.869][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:04.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.884][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:04.885][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:04.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:04.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:04.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:04.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:04.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:04.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:04.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:04.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:04.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:04.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:04.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:04.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:04.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:04.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.947][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:04.948][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:04.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:04.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.955][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:04.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:04.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:04.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:04.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.971][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:04.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:04.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:04.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:04.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.980][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:04.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:04.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:04.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:04.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:04.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:04.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:04.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:04.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:04.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:04.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:05.035][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-04-05 16:03:05.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:05.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:05.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:05.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:05.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:05.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:05.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:05.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:05.059][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-04-05 16:03:05.060][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:05.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2025-04-05 16:03:05.063][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:05.064][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:05.065][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:05.066][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:05.067][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:05.068][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:05.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:05.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:05.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:05.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:05.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:05.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:05.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:05.080][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2025-04-05 16:03:05.083][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:05.084][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:05.085][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2025-04-05 16:03:05.450][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2025-04-05 16:03:05.806][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:05.808][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2025-04-05 16:03:05.812][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2025-04-05 16:03:05.814][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2025-04-05 16:03:05.816][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:05.817][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:05.818][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:05.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:05.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:05.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:05.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:05.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:05.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:05.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:05.832][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.833][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.840][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:05.841][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:05.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:05.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:05.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.848][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:05.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:05.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:05.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:05.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:05.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:05.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:05.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:05.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:05.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:05.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:05.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:05.873][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:05.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.876][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:05.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:05.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.891][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:05.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:05.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:05.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:05.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.899][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:05.900][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:05.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.903][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:05.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:05.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.907][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:05.908][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:05.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:05.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:05.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:05.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:05.952][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-04-05 16:03:05.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:05.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:05.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:05.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:05.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:05.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:05.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:05.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:05.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:05.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:05.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:05.983][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-04-05 16:03:05.984][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:05.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2025-04-05 16:03:05.987][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:05.988][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:05.989][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:05.990][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:05.991][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:05.991][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:05.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:05.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:05.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:06.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:06.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:06.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:06.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:06.003][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2025-04-05 16:03:06.006][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:06.007][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:06.008][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2025-04-05 16:03:06.368][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2025-04-05 16:03:06.732][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:06.734][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2025-04-05 16:03:06.737][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2025-04-05 16:03:06.740][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2025-04-05 16:03:06.741][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:06.742][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:06.743][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:06.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:06.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:06.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:06.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:06.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:06.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:06.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:06.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.764][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:06.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:06.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.768][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:06.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:06.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:06.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:06.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:06.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:06.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.796][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:06.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:06.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.800][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:06.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.803][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:06.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.811][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:06.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:06.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:06.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:06.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.827][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:06.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:06.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:06.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:06.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.834][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:06.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:06.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:06.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:06.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:06.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:06.888][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-04-05 16:03:06.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:06.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:06.900][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:06.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:06.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:06.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:06.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:06.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:06.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:06.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:06.919][private$selectFields]
biodb.TRACE[2025-04-05 16:03:06.920][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:06.921][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:06.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:06.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:06.931][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:06.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:06.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-05 16:03:06.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:06.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:06.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:06.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:06.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:06.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:06.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:06.967][private$selectFields]
biodb.TRACE[2025-04-05 16:03:06.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:06.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:06.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:06.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:06.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:06.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:06.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:06.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:06.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-05 16:03:06.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:06.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:06.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.020][private$selectFields]
biodb.TRACE[2025-04-05 16:03:07.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:07.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:07.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.032][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:07.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.037][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:07.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:07.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:07.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:07.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-05 16:03:07.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:07.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:07.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:07.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:07.067][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:07.068][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:07.069][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:07.414][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:07.760][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:07.764][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2025-04-05 16:03:07.772][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2025-04-05 16:03:07.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:07.799][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-04-05 16:03:07.802][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:07.804][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2025-04-05 16:03:07.807][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:07.809][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:07.810][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:07.812][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:07.814][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:07.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:07.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:07.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:07.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:07.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:07.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:07.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:07.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:07.831][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2025-04-05 16:03:07.834][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:07.835][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:07.837][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2025-04-05 16:03:08.198][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2025-04-05 16:03:08.549][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:08.554][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2025-04-05 16:03:08.561][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2025-04-05 16:03:08.566][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2025-04-05 16:03:08.569][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:08.572][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:08.574][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:08.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:08.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.613][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:08.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:08.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:08.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:08.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:08.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:08.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:08.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:08.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:08.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.652][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:08.653][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:08.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:08.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:08.662][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:08.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.664][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:08.665][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:08.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.680][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:08.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:08.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:08.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:08.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.687][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:08.688][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:08.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:08.696][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:08.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:08.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.739][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-04-05 16:03:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:08.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:08.761][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-04-05 16:03:08.762][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:08.763][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2025-04-05 16:03:08.764][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:08.765][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:08.766][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:08.767][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:08.768][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:08.769][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:08.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:08.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:08.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:08.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:08.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:08.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:08.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:08.781][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2025-04-05 16:03:08.784][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:08.785][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:08.786][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2025-04-05 16:03:09.140][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2025-04-05 16:03:09.494][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:09.496][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2025-04-05 16:03:09.499][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2025-04-05 16:03:09.501][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2025-04-05 16:03:09.503][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:09.504][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:09.505][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:09.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:09.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:09.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:09.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:09.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:09.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:09.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:09.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.533][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:09.534][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:09.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:09.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:09.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:09.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:09.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:09.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:09.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:09.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.557][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:09.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:09.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:09.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:09.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.568][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:09.569][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.572][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:09.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:09.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.583][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:09.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:09.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:09.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:09.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.591][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:09.592][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:09.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:09.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:09.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.599][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:09.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:09.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:09.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:09.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:09.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:09.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.644][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-04-05 16:03:09.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:09.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:09.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:09.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:09.657][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:09.660][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:09.661][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:09.662][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:10.007][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:10.372][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:10.374][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2025-04-05 16:03:10.386][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2025-04-05 16:03:10.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:10.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:10.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:10.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:10.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:10.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:10.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:10.399][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-04-05 16:03:10.399][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:10.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2025-04-05 16:03:10.402][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:10.403][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:10.404][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:10.405][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:10.406][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:10.407][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:10.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:10.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:10.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:10.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:10.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:10.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:10.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:10.418][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2025-04-05 16:03:10.421][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:10.422][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:10.423][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2025-04-05 16:03:10.780][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2025-04-05 16:03:11.133][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:11.135][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2025-04-05 16:03:11.138][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2025-04-05 16:03:11.140][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2025-04-05 16:03:11.142][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:11.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:11.144][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:11.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:11.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:11.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:11.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:11.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:11.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:11.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:11.156][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.164][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:11.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:11.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.171][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:11.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:11.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:11.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:11.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:11.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:11.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:11.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:11.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.187][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:11.187][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:11.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.194][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:11.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:11.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.198][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:11.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:11.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.202][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:11.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.206][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.209][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:11.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:11.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:11.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.217][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:11.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:11.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:11.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:11.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:11.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:11.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:11.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:11.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:11.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:11.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:11.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:11.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:11.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:11.287][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-04-05 16:03:11.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:11.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:11.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:11.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:11.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:11.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:11.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:11.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:11.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:11.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:11.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:11.309][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-04-05 16:03:11.310][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:11.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2025-04-05 16:03:11.312][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:11.313][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:11.314][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:11.315][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:11.316][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:11.317][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:11.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:11.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:11.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:11.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:11.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:11.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:11.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:11.329][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2025-04-05 16:03:11.332][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:11.332][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:11.334][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2025-04-05 16:03:11.733][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2025-04-05 16:03:12.085][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:12.087][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2025-04-05 16:03:12.090][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2025-04-05 16:03:12.092][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2025-04-05 16:03:12.093][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:12.095][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:12.096][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:12.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:12.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:12.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:12.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:12.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:12.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:12.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:12.107][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.115][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:12.116][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:12.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:12.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.123][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:12.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:12.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:12.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:12.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.131][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:12.132][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:12.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.138][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:12.139][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:12.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:12.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.146][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:12.147][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:12.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.150][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.154][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:12.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.167][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:12.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.171][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:12.172][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:12.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:12.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:12.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:12.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:12.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:12.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:12.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.186][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:12.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:12.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:12.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:12.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:12.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:12.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:12.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:12.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:12.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:12.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:12.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:12.239][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-04-05 16:03:12.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:12.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:12.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:12.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:12.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:12.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:12.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:12.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:12.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:12.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:12.260][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-04-05 16:03:12.261][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:12.262][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2025-04-05 16:03:12.264][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:12.265][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:12.266][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:12.267][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:12.267][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:12.268][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:12.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:12.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:12.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:12.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:12.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:12.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:12.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:12.280][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2025-04-05 16:03:12.283][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:12.284][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:12.285][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2025-04-05 16:03:12.641][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2025-04-05 16:03:12.992][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:12.997][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2025-04-05 16:03:13.004][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2025-04-05 16:03:13.010][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2025-04-05 16:03:13.013][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:13.016][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:13.018][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:13.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.067][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:13.069][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:13.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:13.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:13.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.077][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:13.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:13.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:13.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:13.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:13.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:13.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:13.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:13.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:13.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:13.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:13.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.105][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:13.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.120][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:13.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:13.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:13.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:13.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.128][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:13.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:13.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:13.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:13.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.135][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:13.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:13.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:13.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:13.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:13.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:13.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.180][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-04-05 16:03:13.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.192][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:13.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.212][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.229][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.233][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-05 16:03:13.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.264][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.265][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.276][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.280][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-05 16:03:13.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.311][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.323][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.327][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-05 16:03:13.341][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:13.342][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:13.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:13.370][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:13.382][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:13.384][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:03:13.385][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:13.386][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:03:13.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.409][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:13.412][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:13.413][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:03:13.415][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:13.416][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:03:13.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.459][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:13.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.478][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.489][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.494][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:03:13.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.526][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.527][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.527][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.543][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.548][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:13.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.579][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.595][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:03:13.608][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:13.609][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:13.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:13.621][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:13.624][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:13.625][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:03:13.627][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:13.628][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:03:13.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:13.674][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:13.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:03:13.677][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:13.678][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:03:13.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.748][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:13.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.766][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.778][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.783][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:13.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.814][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.826][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:13.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.867][private$selectFields]
biodb.TRACE[2025-04-05 16:03:13.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:13.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:13.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.879][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:13.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.884][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:13.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:13.898][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:13.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:13.911][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:13.914][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:13.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:03:13.916][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:13.917][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:03:13.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:13.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:13.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:13.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:13.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:13.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:13.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:13.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:13.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:13.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:13.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:13.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.092][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:14.095][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:14.096][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:03:14.097][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:14.098][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:03:14.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:14.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:14.163][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:14.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.188][private$selectFields]
biodb.TRACE[2025-04-05 16:03:14.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:14.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:14.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.201][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.218][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:14.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.236][private$selectFields]
biodb.TRACE[2025-04-05 16:03:14.237][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:14.238][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:14.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.248][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.253][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:14.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.284][private$selectFields]
biodb.TRACE[2025-04-05 16:03:14.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:14.286][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:14.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.296][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:14.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.301][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:14.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:14.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:14.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:14.314][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:14.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:14.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:14.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:14.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:14.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:14.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:14.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:14.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:14.349][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:14.352][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:14.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:14.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:14.700][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:15.048][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:15.052][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2025-04-05 16:03:15.061][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2025-04-05 16:03:15.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:15.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:15.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:15.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:15.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:15.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:15.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:15.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:15.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:15.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:15.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:15.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:15.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:15.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:15.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:15.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:15.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:15.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:15.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:15.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:15.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:15.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:15.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:15.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:15.145][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-04-05 16:03:15.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:15.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2025-04-05 16:03:15.148][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:15.149][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:15.150][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:15.151][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:15.152][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:15.153][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:15.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:15.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:15.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:15.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:15.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:15.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:15.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:15.165][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2025-04-05 16:03:15.167][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:15.168][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:15.169][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2025-04-05 16:03:15.538][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2025-04-05 16:03:15.921][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:15.926][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2025-04-05 16:03:15.933][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2025-04-05 16:03:15.938][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2025-04-05 16:03:15.942][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:15.944][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:15.947][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:15.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:15.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:15.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:15.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:15.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:15.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:15.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:15.973][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:15.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.986][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:15.987][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:15.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:15.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:15.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:15.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:15.996][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:15.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:16.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:16.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:16.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:16.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:16.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:16.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.026][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:16.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:16.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.037][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.041][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:16.042][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:16.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:16.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:16.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:16.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:16.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:16.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:16.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.065][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:16.066][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:16.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:16.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:16.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:16.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:16.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:16.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:16.117][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-04-05 16:03:16.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:16.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:16.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:16.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:16.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:16.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:16.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:16.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:16.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:16.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:16.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:16.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:16.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:16.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:16.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:16.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:16.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:16.160][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-04-05 16:03:16.161][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:16.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2025-04-05 16:03:16.163][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:16.169][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:16.170][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:16.171][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:16.172][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:16.173][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:16.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:16.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:16.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:16.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:16.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:16.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:16.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:16.185][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2025-04-05 16:03:16.188][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:16.188][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:16.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2025-04-05 16:03:16.550][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2025-04-05 16:03:16.902][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:16.907][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2025-04-05 16:03:16.914][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2025-04-05 16:03:16.919][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2025-04-05 16:03:16.922][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:16.925][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:16.928][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:16.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:16.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:16.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:16.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:16.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:16.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:16.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:16.953][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:16.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.966][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:16.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:16.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:16.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:16.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:16.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:16.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:16.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:16.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:16.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:16.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:16.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:16.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:16.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:16.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:16.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.002][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:17.003][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:17.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.006][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:17.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.010][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:17.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.021][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:17.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:17.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.029][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:17.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:17.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:17.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:17.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:17.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:17.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:17.092][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-04-05 16:03:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:17.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:17.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:17.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:17.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:17.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:17.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:17.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:17.113][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-04-05 16:03:17.114][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:17.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2025-04-05 16:03:17.117][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:17.118][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:17.119][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:17.120][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:17.121][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:17.122][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:17.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:17.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:17.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:17.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:17.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:17.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:17.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:17.133][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2025-04-05 16:03:17.136][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:17.137][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:17.138][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2025-04-05 16:03:17.490][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2025-04-05 16:03:17.838][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:17.843][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2025-04-05 16:03:17.850][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2025-04-05 16:03:17.856][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2025-04-05 16:03:17.859][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:17.861][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:17.864][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:17.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:17.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:17.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:17.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:17.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:17.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:17.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:17.890][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.892][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.903][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:17.904][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:17.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:17.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:17.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.913][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:17.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:17.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:17.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:17.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:17.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.927][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:17.928][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:17.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:17.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:17.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.935][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:17.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.939][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:17.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:17.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:17.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.952][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:17.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:17.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:17.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.961][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:17.962][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:17.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:17.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:17.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:17.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:17.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:17.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:17.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:17.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:17.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:18.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:18.025][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-04-05 16:03:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:18.037][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:18.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:18.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:18.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:18.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:18.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:18.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:18.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:18.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.057][private$selectFields]
biodb.TRACE[2025-04-05 16:03:18.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:18.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:18.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.069][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.073][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:18.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:18.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:18.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:18.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:18.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:18.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:18.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:18.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.104][private$selectFields]
biodb.TRACE[2025-04-05 16:03:18.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:18.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:18.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.116][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.121][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:18.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-05 16:03:18.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:18.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:18.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:18.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:18.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:18.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:18.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:18.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.158][private$selectFields]
biodb.TRACE[2025-04-05 16:03:18.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:18.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:18.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.170][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:18.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.174][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:18.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:18.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:18.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-05 16:03:18.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:18.189][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:18.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:18.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:18.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:18.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:18.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:18.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:18.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:18.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:18.204][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:18.205][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:18.207][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:18.559][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:19.083][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:19.085][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2025-04-05 16:03:19.088][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2025-04-05 16:03:19.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:19.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:19.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:19.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:19.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:19.157][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:19.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:19.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.187][private$selectFields]
biodb.TRACE[2025-04-05 16:03:19.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:19.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:19.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.199][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.204][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:19.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:19.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.235][private$selectFields]
biodb.TRACE[2025-04-05 16:03:19.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:19.237][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:19.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.247][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.251][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:19.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:19.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:19.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.283][private$selectFields]
biodb.TRACE[2025-04-05 16:03:19.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:19.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:19.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:19.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.299][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:19.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:19.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:19.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:19.313][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:19.314][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:19.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:19.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:19.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:19.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:19.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:19.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:19.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:19.331][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:19.334][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:19.335][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:19.337][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:19.683][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:20.033][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:20.035][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2025-04-05 16:03:20.038][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2025-04-05 16:03:20.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:20.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:20.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:20.072][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-04-05 16:03:20.073][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:20.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2025-04-05 16:03:20.075][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:20.076][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:20.077][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:20.078][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:20.079][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:20.080][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:20.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:20.092][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2025-04-05 16:03:20.094][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:20.095][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:20.096][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2025-04-05 16:03:20.454][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2025-04-05 16:03:20.801][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:20.804][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2025-04-05 16:03:20.807][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2025-04-05 16:03:20.809][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2025-04-05 16:03:20.811][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:20.812][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:20.813][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:20.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:20.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.834][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:20.835][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:20.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:20.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:20.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.842][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:20.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:20.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:20.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:20.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:20.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:20.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:20.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:20.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:20.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:20.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:20.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:20.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.870][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:20.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.874][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:20.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:20.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.898][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:20.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:20.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:20.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.906][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:20.907][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:20.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:20.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:20.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:20.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:20.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:20.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:20.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:20.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:20.959][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-04-05 16:03:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:20.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:20.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:20.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:20.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:20.981][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-04-05 16:03:20.982][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:20.983][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2025-04-05 16:03:20.985][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:20.986][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:20.987][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:20.988][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:20.989][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:20.989][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:20.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:20.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:20.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:20.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:20.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:20.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:21.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:21.001][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2025-04-05 16:03:21.004][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:21.005][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:21.006][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2025-04-05 16:03:21.366][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2025-04-05 16:03:21.711][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:21.714][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2025-04-05 16:03:21.717][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2025-04-05 16:03:21.719][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2025-04-05 16:03:21.721][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:21.722][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:21.723][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:21.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:21.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:21.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:21.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:21.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:21.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:21.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:21.736][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.744][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:21.745][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:21.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:21.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.762][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:21.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:21.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:21.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:21.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:21.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:21.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:21.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:21.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:21.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:21.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.789][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:21.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:21.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.793][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:21.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:21.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:21.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:21.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:21.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:21.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.804][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:21.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:21.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:21.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:21.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.812][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:21.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:21.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:21.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:21.821][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:21.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:21.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:21.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:21.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:21.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:21.865][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-04-05 16:03:21.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:21.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:21.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:21.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:21.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:21.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:21.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:21.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:21.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:21.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:21.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:21.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:21.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:21.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:21.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:21.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:21.887][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-04-05 16:03:21.888][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:21.889][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2025-04-05 16:03:21.890][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:21.891][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:21.892][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:21.893][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:21.894][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:21.895][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:21.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:21.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:21.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:21.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:21.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:21.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:21.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:21.907][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2025-04-05 16:03:21.915][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:21.916][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:21.918][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2025-04-05 16:03:22.304][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2025-04-05 16:03:22.654][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:22.656][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2025-04-05 16:03:22.659][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2025-04-05 16:03:22.662][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2025-04-05 16:03:22.663][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:22.664][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:22.665][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:22.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:22.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:22.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:22.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:22.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:22.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:22.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:22.678][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.686][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:22.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:22.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:22.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:22.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.694][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:22.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:22.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:22.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:22.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:22.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:22.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:22.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:22.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.718][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:22.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:22.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.722][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:22.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:22.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:22.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.737][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:22.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:22.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:22.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:22.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.745][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:22.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:22.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:22.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:22.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:22.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:22.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:22.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:22.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:22.797][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-04-05 16:03:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:22.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:22.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:22.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:22.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:22.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:22.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:22.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:22.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:22.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:22.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:22.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:22.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:22.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:22.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:22.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:22.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:22.849][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-04-05 16:03:22.850][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:22.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2025-04-05 16:03:22.852][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:22.853][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:22.854][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:22.855][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:22.856][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:22.857][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:22.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:22.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:22.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:22.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:22.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:22.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:22.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:22.869][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2025-04-05 16:03:22.871][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:22.872][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:22.873][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2025-04-05 16:03:23.238][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2025-04-05 16:03:23.594][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:23.599][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2025-04-05 16:03:23.606][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2025-04-05 16:03:23.611][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2025-04-05 16:03:23.615][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:23.617][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:23.620][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:23.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:23.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:23.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:23.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:23.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:23.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:23.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:23.647][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.659][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:23.661][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:23.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:23.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:23.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:23.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:23.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:23.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:23.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:23.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.696][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:23.697][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:23.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.704][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:23.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.708][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:23.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:23.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:23.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:23.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.732][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:23.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:23.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:23.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:23.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.741][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:23.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:23.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:23.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:23.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:23.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:23.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:23.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:23.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:23.796][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-04-05 16:03:23.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:23.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:23.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:23.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:23.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:23.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:23.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:23.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:23.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:23.819][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-04-05 16:03:23.820][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:23.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2025-04-05 16:03:23.823][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:23.824][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:23.825][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:23.826][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:23.827][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:23.828][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:23.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:23.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:23.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:23.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:23.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:23.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:23.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:23.841][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2025-04-05 16:03:23.843][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:23.844][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:23.846][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2025-04-05 16:03:24.211][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2025-04-05 16:03:24.569][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:24.573][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2025-04-05 16:03:24.581][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2025-04-05 16:03:24.586][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2025-04-05 16:03:24.589][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:24.592][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:24.595][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:24.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:24.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:24.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:24.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:24.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:24.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:24.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:24.622][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.634][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:24.636][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:24.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.645][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:24.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:24.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:24.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:24.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:24.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:24.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:24.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:24.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:24.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:24.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:24.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:24.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.680][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:24.681][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:24.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:24.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:24.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.688][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:24.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:24.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.692][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:24.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.695][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:24.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:24.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:24.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:24.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:24.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:24.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:24.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:24.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.711][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:24.712][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:24.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:24.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:24.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.719][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:24.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:24.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:24.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:24.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:24.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:24.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:24.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:24.764][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-04-05 16:03:24.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:24.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:24.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:24.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:24.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:24.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:24.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:24.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:24.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:24.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:24.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:24.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:24.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:24.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:24.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:24.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:24.785][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-04-05 16:03:24.786][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:24.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2025-04-05 16:03:24.789][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:24.790][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:24.791][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:24.792][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:24.793][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:24.794][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:24.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:24.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:24.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:24.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:24.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:24.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:24.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:24.806][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2025-04-05 16:03:24.813][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:24.814][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:24.816][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2025-04-05 16:03:25.170][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2025-04-05 16:03:25.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:25.536][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2025-04-05 16:03:25.544][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2025-04-05 16:03:25.549][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2025-04-05 16:03:25.552][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:25.555][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:25.558][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:25.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:25.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:25.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:25.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:25.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:25.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:25.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:25.584][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.597][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:25.598][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:25.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.602][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:25.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:25.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:25.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:25.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:25.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:25.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:25.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:25.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:25.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:25.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:25.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:25.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.636][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:25.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.640][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:25.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:25.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.652][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:25.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:25.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:25.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.660][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:25.661][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:25.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:25.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:25.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:25.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:25.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:25.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:25.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:25.713][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-04-05 16:03:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:25.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:25.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:25.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:25.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:25.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:25.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:25.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:25.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:25.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:25.747][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-04-05 16:03:25.748][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:25.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2025-04-05 16:03:25.750][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:25.751][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:25.752][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:25.753][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:25.754][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:25.755][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:25.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:25.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:25.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:25.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:25.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:25.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:25.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:25.767][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2025-04-05 16:03:25.769][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:25.770][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:25.771][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2025-04-05 16:03:26.136][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2025-04-05 16:03:26.494][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:26.499][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2025-04-05 16:03:26.506][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2025-04-05 16:03:26.511][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2025-04-05 16:03:26.514][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:26.517][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:26.520][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:26.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:26.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:26.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:26.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:26.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:26.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:26.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:26.546][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.558][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:26.560][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:26.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:26.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:26.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:26.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:26.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:26.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:26.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:26.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:26.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:26.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:26.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:26.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:26.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.598][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:26.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.602][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:26.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:26.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:26.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:26.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:26.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.613][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:26.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:26.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.621][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:26.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:26.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:26.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:26.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.629][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:26.630][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:26.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:26.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:26.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:26.683][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-04-05 16:03:26.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:26.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:26.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:26.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:26.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:26.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:26.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:26.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:26.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:26.705][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-04-05 16:03:26.706][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:26.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2025-04-05 16:03:26.709][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:26.710][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:26.711][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:26.712][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:26.713][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:26.713][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:26.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:26.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:26.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:26.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:26.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:26.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:26.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:26.725][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2025-04-05 16:03:26.728][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:26.729][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:26.730][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2025-04-05 16:03:27.090][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2025-04-05 16:03:27.458][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:27.463][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2025-04-05 16:03:27.470][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2025-04-05 16:03:27.476][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2025-04-05 16:03:27.479][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:27.481][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:27.484][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:27.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:27.510][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.523][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:27.525][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:27.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.529][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.534][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:27.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:27.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:27.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:27.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:27.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:27.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:27.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.552][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:27.553][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:27.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:27.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:27.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:27.562][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:27.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.565][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:27.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.581][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:27.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:27.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:27.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:27.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:27.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.594][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:27.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:27.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:27.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.603][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:27.604][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:27.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:27.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:27.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:27.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:27.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.658][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-04-05 16:03:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:27.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:27.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:27.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:27.681][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-04-05 16:03:27.682][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:27.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2025-04-05 16:03:27.685][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:27.686][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:27.687][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:27.688][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:27.689][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:27.690][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:27.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:27.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:27.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:27.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:27.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:27.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:27.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:27.703][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2025-04-05 16:03:27.705][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:27.706][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:27.708][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2025-04-05 16:03:28.097][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2025-04-05 16:03:28.454][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:28.459][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2025-04-05 16:03:28.466][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2025-04-05 16:03:28.472][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2025-04-05 16:03:28.475][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:28.478][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:28.481][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:28.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:28.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:28.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:28.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:28.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:28.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:28.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:28.507][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.532][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:28.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:28.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.542][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:28.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:28.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:28.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:28.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:28.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:28.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:28.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:28.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:28.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:28.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:28.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:28.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.571][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:28.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.579][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:28.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:28.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:28.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:28.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.587][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:28.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:28.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:28.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.595][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:28.596][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:28.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:28.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:28.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.603][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:28.604][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:28.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:28.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:28.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:28.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:28.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:28.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:28.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:28.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:28.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:28.650][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-04-05 16:03:28.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:28.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:28.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:28.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:28.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:28.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:28.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:28.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:28.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:28.674][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-04-05 16:03:28.675][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:28.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2025-04-05 16:03:28.678][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:28.679][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:28.680][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:28.681][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:28.682][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:28.683][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:28.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:28.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:28.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:28.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:28.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:28.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:28.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:28.704][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2025-04-05 16:03:28.707][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:28.708][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:28.709][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2025-04-05 16:03:29.067][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2025-04-05 16:03:29.422][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:29.427][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2025-04-05 16:03:29.434][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2025-04-05 16:03:29.440][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2025-04-05 16:03:29.443][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:29.445][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:29.448][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:29.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:29.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:29.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:29.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:29.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:29.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:29.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:29.475][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.488][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:29.489][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:29.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:29.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.498][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:29.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:29.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:29.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:29.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:29.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:29.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:29.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.523][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:29.524][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:29.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.527][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:29.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.531][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:29.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:29.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:29.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:29.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.542][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:29.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:29.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.550][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:29.551][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:29.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:29.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:29.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:29.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:29.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:29.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:29.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:29.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:29.614][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-04-05 16:03:29.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:29.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:29.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:29.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:29.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:29.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:29.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:29.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:29.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:29.637][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-04-05 16:03:29.638][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:29.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2025-04-05 16:03:29.641][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:29.642][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:29.643][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:29.644][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:29.645][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:29.646][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:29.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:29.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:29.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:29.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:29.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:29.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:29.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:29.658][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2025-04-05 16:03:29.660][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:29.661][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:29.662][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2025-04-05 16:03:30.017][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2025-04-05 16:03:30.366][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:30.371][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2025-04-05 16:03:30.378][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2025-04-05 16:03:30.383][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2025-04-05 16:03:30.387][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:30.389][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:30.392][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:30.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:30.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.431][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:30.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:30.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:30.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:30.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:30.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:30.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:30.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:30.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:30.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.459][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:30.460][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:30.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.467][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:30.468][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:30.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.471][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:30.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:30.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:30.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:30.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.487][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:30.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:30.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:30.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:30.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:30.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:30.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:30.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.559][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-04-05 16:03:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:30.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:30.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:30.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:30.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:30.710][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-04-05 16:03:30.711][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:30.713][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2025-04-05 16:03:30.714][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:30.715][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:30.716][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:30.717][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:30.718][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:30.719][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:30.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:30.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:30.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:30.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:30.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:30.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:30.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:30.731][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2025-04-05 16:03:30.733][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:30.734][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:30.735][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2025-04-05 16:03:31.093][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2025-04-05 16:03:31.445][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:31.448][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2025-04-05 16:03:31.452][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2025-04-05 16:03:31.454][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2025-04-05 16:03:31.456][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:31.457][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:31.459][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:31.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:31.474][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.484][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:31.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:31.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:31.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:31.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:31.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:31.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:31.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:31.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:31.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:31.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:31.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:31.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:31.520][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:31.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.523][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:31.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:31.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:31.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:31.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.539][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:31.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:31.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:31.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:31.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.556][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:31.557][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:31.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:31.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:31.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:31.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:31.610][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-04-05 16:03:31.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:31.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:31.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:31.652][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-04-05 16:03:31.652][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:31.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2025-04-05 16:03:31.655][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:31.656][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:31.657][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:31.658][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:31.659][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:31.660][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:31.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:31.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:31.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:31.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:31.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:31.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:31.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:31.672][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2025-04-05 16:03:31.674][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:31.675][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:31.676][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2025-04-05 16:03:32.031][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2025-04-05 16:03:32.388][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:32.393][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2025-04-05 16:03:32.399][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2025-04-05 16:03:32.404][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2025-04-05 16:03:32.407][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:32.410][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:32.412][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:32.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:32.437][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.461][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:32.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:32.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:32.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:32.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:32.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:32.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:32.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:32.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:32.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:32.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:32.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.494][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:32.495][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:32.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.498][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:32.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.502][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:32.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:32.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:32.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.514][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:32.515][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:32.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.521][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:32.522][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:32.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.525][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:32.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:32.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:32.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:32.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:32.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:32.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:32.574][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-04-05 16:03:32.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:32.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:32.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:32.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:32.596][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-04-05 16:03:32.597][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:32.599][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2025-04-05 16:03:32.600][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:32.601][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:32.602][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:32.603][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:32.604][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:32.605][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:32.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:32.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:32.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:32.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:32.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:32.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:32.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:32.623][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2025-04-05 16:03:32.626][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:32.626][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:32.628][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2025-04-05 16:03:32.984][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2025-04-05 16:03:33.342][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:33.347][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2025-04-05 16:03:33.354][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2025-04-05 16:03:33.360][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2025-04-05 16:03:33.363][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:33.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:33.368][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:33.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:33.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:33.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:33.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:33.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:33.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:33.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:33.394][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.407][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:33.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:33.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:33.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:33.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:33.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:33.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:33.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:33.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:33.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:33.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:33.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:33.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.442][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:33.443][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:33.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.446][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:33.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.449][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:33.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:33.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:33.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:33.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:33.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:33.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:33.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.469][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:33.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:33.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:33.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:33.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:33.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:33.531][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-04-05 16:03:33.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:33.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:33.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:33.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:33.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:33.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:33.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:33.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:33.553][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-04-05 16:03:33.554][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:33.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2025-04-05 16:03:33.556][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:33.557][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:33.558][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:33.559][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:33.560][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:33.561][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:33.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:33.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:33.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:33.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:33.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:33.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:33.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:33.573][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2025-04-05 16:03:33.575][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:33.576][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:33.578][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2025-04-05 16:03:33.934][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2025-04-05 16:03:34.294][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:34.298][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2025-04-05 16:03:34.304][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2025-04-05 16:03:34.309][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2025-04-05 16:03:34.312][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:34.315][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:34.317][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:34.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:34.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:34.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:34.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:34.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:34.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:34.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:34.342][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.354][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:34.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:34.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.365][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:34.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:34.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:34.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:34.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:34.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:34.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:34.391][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:34.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.394][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:34.395][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:34.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:34.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.409][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:34.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:34.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.417][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:34.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:34.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:34.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:34.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:34.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:34.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:34.480][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-04-05 16:03:34.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:34.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:34.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:34.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:34.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:34.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:34.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:34.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:34.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:34.501][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-04-05 16:03:34.502][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:34.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2025-04-05 16:03:34.505][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:34.506][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:34.507][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:34.508][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:34.509][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:34.510][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:34.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:34.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:34.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:34.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:34.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:34.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:34.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:34.522][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2025-04-05 16:03:34.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:34.525][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:34.526][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2025-04-05 16:03:34.882][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2025-04-05 16:03:35.239][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:35.243][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2025-04-05 16:03:35.249][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2025-04-05 16:03:35.254][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2025-04-05 16:03:35.257][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:35.259][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:35.262][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:35.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:35.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:35.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:35.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:35.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:35.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:35.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:35.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.299][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:35.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.310][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:35.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:35.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:35.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:35.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:35.338][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:35.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:35.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:35.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.349][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:35.350][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:35.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:35.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.364][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:35.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:35.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:35.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:35.373][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:35.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:35.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:35.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:35.424][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-04-05 16:03:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:35.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:35.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:35.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:35.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:35.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:35.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:35.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:35.446][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-04-05 16:03:35.446][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:35.448][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2025-04-05 16:03:35.449][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:35.450][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:35.451][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:35.452][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:35.453][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:35.454][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:35.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:35.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:35.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:35.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:35.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:35.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:35.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:35.466][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2025-04-05 16:03:35.469][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:35.470][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:35.471][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2025-04-05 16:03:35.831][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2025-04-05 16:03:36.182][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:36.187][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2025-04-05 16:03:36.193][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2025-04-05 16:03:36.198][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2025-04-05 16:03:36.201][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:36.217][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:36.220][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:36.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:36.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:36.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:36.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:36.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:36.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:36.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:36.242][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.253][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:36.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:36.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:36.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.262][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:36.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:36.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:36.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.271][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:36.272][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:36.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:36.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:36.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:36.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:36.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:36.287][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:36.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.290][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:36.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:36.299][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:36.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.305][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:36.306][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:36.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:36.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.313][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:36.314][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:36.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:36.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.321][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:36.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:36.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:36.366][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-04-05 16:03:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:36.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:36.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:36.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:36.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:36.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:36.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:36.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:36.394][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-04-05 16:03:36.395][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:36.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2025-04-05 16:03:36.398][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:36.399][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:36.400][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:36.401][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:36.402][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:36.403][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:36.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:36.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:36.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:36.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:36.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:36.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:36.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:36.415][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2025-04-05 16:03:36.418][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:36.418][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:36.420][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2025-04-05 16:03:36.775][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2025-04-05 16:03:37.131][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:37.135][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2025-04-05 16:03:37.142][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2025-04-05 16:03:37.147][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2025-04-05 16:03:37.149][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:37.152][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:37.154][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:37.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.179][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.192][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:37.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:37.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.202][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:37.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:37.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:37.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:37.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:37.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:37.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.228][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:37.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.231][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:37.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:37.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.246][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:37.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:37.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:37.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.254][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:37.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:37.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:37.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:37.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:37.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:37.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:37.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:37.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.317][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-04-05 16:03:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:37.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.369][private$selectFields]
biodb.TRACE[2025-04-05 16:03:37.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:37.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:37.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.373][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.381][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.385][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:37.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:37.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.416][private$selectFields]
biodb.TRACE[2025-04-05 16:03:37.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:37.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:37.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.429][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.433][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:37.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:37.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.470][private$selectFields]
biodb.TRACE[2025-04-05 16:03:37.471][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:37.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:37.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.482][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.487][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:37.500][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:37.501][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:37.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:37.528][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:37.531][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:37.532][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2025-04-05 16:03:37.533][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:37.535][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2025-04-05 16:03:37.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.628][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:37.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.647][private$selectFields]
biodb.TRACE[2025-04-05 16:03:37.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:37.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:37.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.672][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:37.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:03:37.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.704][private$selectFields]
biodb.TRACE[2025-04-05 16:03:37.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:37.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:37.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.716][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.720][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.733][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-05 16:03:37.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.758][private$selectFields]
biodb.TRACE[2025-04-05 16:03:37.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:37.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:37.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.770][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.775][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:37.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-05 16:03:37.788][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:37.789][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:37.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:37.802][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:37.821][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:37.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2025-04-05 16:03:37.823][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:37.825][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2025-04-05 16:03:37.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:37.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:37.977][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:37.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:37.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:37.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:37.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:37.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:37.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:37.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:37.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.995][private$selectFields]
biodb.TRACE[2025-04-05 16:03:37.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:37.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:37.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:37.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.016][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.021][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-05 16:03:38.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.210][private$selectFields]
biodb.TRACE[2025-04-05 16:03:38.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:38.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:38.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.222][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-05 16:03:38.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.257][private$selectFields]
biodb.TRACE[2025-04-05 16:03:38.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:38.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:38.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.274][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-05 16:03:38.287][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:38.288][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:38.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:38.300][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:38.318][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:38.320][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2025-04-05 16:03:38.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:38.322][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2025-04-05 16:03:38.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:38.371][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:38.373][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2025-04-05 16:03:38.374][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:38.375][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2025-04-05 16:03:38.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.449][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:38.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.471][private$selectFields]
biodb.TRACE[2025-04-05 16:03:38.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:38.473][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:38.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.496][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.501][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.518][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-05 16:03:38.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.536][private$selectFields]
biodb.TRACE[2025-04-05 16:03:38.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:38.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:38.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.548][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.553][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-05 16:03:38.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.583][private$selectFields]
biodb.TRACE[2025-04-05 16:03:38.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:38.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:38.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.595][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.599][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-05 16:03:38.613][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:38.613][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:38.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:38.640][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:38.659][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:38.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:03:38.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:38.663][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:03:38.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.686][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:38.689][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:38.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:03:38.691][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:38.693][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:03:38.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.736][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:38.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.756][private$selectFields]
biodb.TRACE[2025-04-05 16:03:38.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:38.757][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:38.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.767][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.768][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.772][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-05 16:03:38.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.807][private$selectFields]
biodb.TRACE[2025-04-05 16:03:38.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:38.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:38.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.819][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.824][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.836][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:38.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.854][private$selectFields]
biodb.TRACE[2025-04-05 16:03:38.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:38.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:38.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.866][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:38.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:38.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-05 16:03:38.883][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:38.884][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:38.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:38.897][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:38.899][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:38.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:03:38.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:38.903][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:03:38.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.947][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:38.949][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:38.951][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:03:38.952][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:38.953][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:03:38.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:38.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:38.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:38.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:38.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:38.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:38.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:38.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:38.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.017][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:39.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.036][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.038][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.047][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.048][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.053][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:39.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.084][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.085][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.096][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:39.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.136][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.137][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.138][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.148][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.153][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:39.166][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:39.167][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:39.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:39.179][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:39.182][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:39.183][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:03:39.184][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:39.186][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:03:39.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.353][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:39.356][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:39.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:03:39.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:39.360][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:03:39.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.428][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:39.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.447][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.448][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:39.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.494][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.505][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.510][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:39.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.540][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.542][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.552][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.557][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:39.570][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:39.571][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:39.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:39.598][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:39.601][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:39.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2025-04-05 16:03:39.603][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:39.605][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2025-04-05 16:03:39.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.732][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:39.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.751][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:39.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.798][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.800][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.823][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-05 16:03:39.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.854][private$selectFields]
biodb.TRACE[2025-04-05 16:03:39.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:39.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:39.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.866][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:39.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:39.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-05 16:03:39.884][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:39.885][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:39.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:39.897][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:39.916][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:39.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2025-04-05 16:03:39.919][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:39.920][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2025-04-05 16:03:39.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:39.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:39.986][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:39.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:39.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:39.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:39.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:39.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:39.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:39.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.010][private$selectFields]
biodb.TRACE[2025-04-05 16:03:40.010][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:40.011][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:40.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.021][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.026][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:40.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.056][private$selectFields]
biodb.TRACE[2025-04-05 16:03:40.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:40.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:40.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.068][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:40.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.103][private$selectFields]
biodb.TRACE[2025-04-05 16:03:40.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:40.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:40.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.122][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.128][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-05 16:03:40.144][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:40.145][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:40.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:40.162][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:40.166][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:40.167][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2025-04-05 16:03:40.168][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:40.170][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2025-04-05 16:03:40.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.778][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:40.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.797][private$selectFields]
biodb.TRACE[2025-04-05 16:03:40.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:40.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:40.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.808][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.813][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:40.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.844][private$selectFields]
biodb.TRACE[2025-04-05 16:03:40.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:40.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:40.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.856][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.860][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-05 16:03:40.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.891][private$selectFields]
biodb.TRACE[2025-04-05 16:03:40.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:40.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:40.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.903][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:40.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.908][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:40.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:40.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-05 16:03:40.921][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:40.922][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:03:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:40.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:40.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:40.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:40.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:40.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:40.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:40.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:40.999][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:41.001][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:41.002][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:41.004][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:41.363][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:41.968][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:41.972][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2025-04-05 16:03:41.980][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2025-04-05 16:03:41.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:41.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:41.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:42.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:42.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:42.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:42.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:42.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:42.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:42.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:42.127][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-04-05 16:03:42.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:42.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2025-04-05 16:03:42.131][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:42.132][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:42.133][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:42.134][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:42.135][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:42.136][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:42.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:42.147][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2025-04-05 16:03:42.150][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:42.151][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:42.152][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2025-04-05 16:03:42.519][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2025-04-05 16:03:42.883][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:42.887][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2025-04-05 16:03:42.894][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2025-04-05 16:03:42.900][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2025-04-05 16:03:42.903][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:42.906][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:42.908][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:42.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:42.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:42.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:42.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:42.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:42.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:42.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:42.934][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.946][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:42.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:42.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.957][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:42.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:42.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:42.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:42.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:42.975][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:42.983][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:42.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.990][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:42.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:42.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:42.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.016][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:43.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:43.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:43.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:43.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.023][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:43.024][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:43.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.031][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:43.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:43.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.076][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-04-05 16:03:43.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:43.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:43.097][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-04-05 16:03:43.098][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:43.099][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2025-04-05 16:03:43.101][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:43.102][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:43.103][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:43.104][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:43.105][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:43.105][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:43.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:43.117][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2025-04-05 16:03:43.120][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:43.121][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:43.122][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2025-04-05 16:03:43.482][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2025-04-05 16:03:43.850][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:43.854][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2025-04-05 16:03:43.861][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2025-04-05 16:03:43.867][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2025-04-05 16:03:43.870][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:43.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:43.875][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:43.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:43.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:43.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:43.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:43.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:43.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:43.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:43.901][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:43.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.914][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:43.915][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:43.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.919][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:43.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:43.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.924][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:43.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:43.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:43.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:43.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:43.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:43.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:43.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:43.943][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:43.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:43.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:43.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.949][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:43.950][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:43.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:43.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.957][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:43.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.961][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:43.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:43.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.965][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.973][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:43.973][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:43.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:43.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.980][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:43.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:43.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:43.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:43.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:43.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:43.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:43.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:43.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:44.033][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-04-05 16:03:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:44.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:44.046][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:44.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:44.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:44.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:44.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:44.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:44.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:44.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.065][private$selectFields]
biodb.TRACE[2025-04-05 16:03:44.066][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:44.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:44.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.085][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.090][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:03:44.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:44.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:44.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:44.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:44.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:44.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:44.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.120][private$selectFields]
biodb.TRACE[2025-04-05 16:03:44.121][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:44.122][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:44.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.132][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.137][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:03:44.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:44.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:44.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:44.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:44.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:44.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:44.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.168][private$selectFields]
biodb.TRACE[2025-04-05 16:03:44.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:44.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:44.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.180][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:44.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.184][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:44.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:44.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:44.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-05 16:03:44.197][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:44.198][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:44.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:44.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:44.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:44.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:44.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:44.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:44.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:44.211][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:44.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:44.215][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:44.217][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:44.581][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:45.279][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:45.284][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2025-04-05 16:03:45.292][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2025-04-05 16:03:45.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:45.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:45.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:45.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:45.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:45.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:45.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:45.327][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-04-05 16:03:45.329][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:45.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2025-04-05 16:03:45.333][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:45.335][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:45.337][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:45.338][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:45.340][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:45.341][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:45.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:45.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:45.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:45.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:45.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:45.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:45.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:45.356][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2025-04-05 16:03:45.359][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:45.360][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:45.362][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2025-04-05 16:03:45.721][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2025-04-05 16:03:46.104][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:46.109][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2025-04-05 16:03:46.116][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2025-04-05 16:03:46.122][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2025-04-05 16:03:46.125][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:46.128][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:46.130][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:46.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:46.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:46.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:46.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:46.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:46.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:46.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:46.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:46.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:46.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.180][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:46.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:46.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:46.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:46.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:46.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:46.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:46.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:46.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:46.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.211][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:46.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:46.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.215][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:46.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:46.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.231][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:46.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:46.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.240][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:46.241][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:46.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:46.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.248][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:46.249][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:46.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:46.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:46.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:46.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:46.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:46.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:46.304][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-04-05 16:03:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:46.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:46.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:46.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:46.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:46.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:46.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:46.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:46.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:46.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:46.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:46.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:46.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:46.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:46.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:46.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:46.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:46.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:46.356][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-04-05 16:03:46.357][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:46.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2025-04-05 16:03:46.361][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:46.362][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:46.363][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:46.364][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:46.365][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:46.366][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:46.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:46.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:46.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:46.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:46.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:46.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:46.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:46.380][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2025-04-05 16:03:46.384][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:46.385][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:46.386][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2025-04-05 16:03:46.745][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2025-04-05 16:03:47.337][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:47.339][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2025-04-05 16:03:47.343][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2025-04-05 16:03:47.345][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2025-04-05 16:03:47.347][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:47.348][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:47.350][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:47.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:47.364][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.374][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:47.375][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:47.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:47.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.383][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:47.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:47.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:47.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:47.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:47.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:47.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:47.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:47.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:47.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:47.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:47.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:47.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.409][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:47.410][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:47.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.414][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:47.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:47.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.418][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:47.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.422][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:47.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:47.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.444][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:47.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:47.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:47.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:47.503][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-04-05 16:03:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:47.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:47.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:47.540][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:47.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.575][private$selectFields]
biodb.TRACE[2025-04-05 16:03:47.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:47.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:47.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.588][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.593][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:47.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-05 16:03:47.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:47.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.627][private$selectFields]
biodb.TRACE[2025-04-05 16:03:47.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:47.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:47.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.639][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.640][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.642][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.644][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:47.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:47.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.676][private$selectFields]
biodb.TRACE[2025-04-05 16:03:47.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:47.677][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:47.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.688][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:47.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.692][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:47.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:47.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:03:47.706][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:47.707][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:47.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:47.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:47.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:47.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:47.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:47.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:47.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:47.720][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:47.723][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:47.724][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:47.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:48.313][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:48.661][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:48.663][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2025-04-05 16:03:48.667][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2025-04-05 16:03:48.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:48.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:48.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:48.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:48.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:48.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:48.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:48.692][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-04-05 16:03:48.694][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:48.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2025-04-05 16:03:48.699][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:48.701][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:48.703][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:48.704][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:48.706][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:48.707][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:48.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:48.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:48.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:48.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:48.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:48.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:48.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:48.724][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2025-04-05 16:03:48.727][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:48.728][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:48.729][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2025-04-05 16:03:49.090][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2025-04-05 16:03:49.447][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:49.451][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2025-04-05 16:03:49.459][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2025-04-05 16:03:49.464][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2025-04-05 16:03:49.467][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:49.470][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:49.473][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:49.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:49.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:49.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:49.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:49.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:49.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:49.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:49.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.512][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:49.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:49.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:49.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.522][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:49.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:49.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:49.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:49.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:49.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:49.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:49.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:49.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.548][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:49.549][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:49.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.552][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:49.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.556][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:49.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.568][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:49.569][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:49.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:49.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.576][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:49.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:49.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:49.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:49.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:49.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:49.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:49.639][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-04-05 16:03:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:49.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:49.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:49.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:49.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:49.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:49.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:49.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:49.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:49.661][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-04-05 16:03:49.662][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:49.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2025-04-05 16:03:49.665][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:49.666][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:49.667][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:49.668][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:49.669][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:49.670][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:49.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:49.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:49.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:49.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:49.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:49.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:49.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:49.682][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2025-04-05 16:03:49.684][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:49.685][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:49.686][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2025-04-05 16:03:50.045][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2025-04-05 16:03:50.395][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:50.400][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2025-04-05 16:03:50.407][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2025-04-05 16:03:50.413][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2025-04-05 16:03:50.416][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:50.419][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:50.421][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:50.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:50.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:50.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:50.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:50.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:50.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:50.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:50.448][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.461][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:50.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:50.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:50.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:50.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:50.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:50.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:50.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:50.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.496][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:50.497][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:50.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.500][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:50.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.504][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:50.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:50.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.508][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.516][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:50.517][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:50.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:50.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:50.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.524][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:50.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:50.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:50.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:50.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.532][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:50.533][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:50.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:50.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:50.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:50.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:50.578][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-04-05 16:03:50.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:50.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:50.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:50.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:50.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:50.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:50.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:50.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:50.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:50.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:50.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:50.600][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-04-05 16:03:50.601][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:50.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2025-04-05 16:03:50.603][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:50.604][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:50.605][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:50.606][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:50.607][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:50.608][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:50.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:50.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:50.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:50.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:50.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:50.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:50.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:50.620][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2025-04-05 16:03:50.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:50.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:50.625][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2025-04-05 16:03:50.981][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2025-04-05 16:03:51.335][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:51.340][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2025-04-05 16:03:51.347][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2025-04-05 16:03:51.352][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2025-04-05 16:03:51.356][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:51.377][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:51.380][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:51.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:51.400][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.411][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:51.412][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:51.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.420][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:51.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:51.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:51.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:51.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:51.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:51.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:51.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:51.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:51.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:51.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.447][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:51.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.451][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.462][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:51.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:51.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.470][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:51.471][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:51.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:51.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:51.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:51.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:51.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:51.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.522][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-04-05 16:03:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:51.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:51.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:51.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:51.544][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-04-05 16:03:51.545][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:51.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2025-04-05 16:03:51.548][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:51.549][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:51.550][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:51.551][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:51.552][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:51.553][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:51.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:51.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:51.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:51.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:51.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:51.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:51.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:51.565][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2025-04-05 16:03:51.567][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:51.568][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:51.569][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2025-04-05 16:03:51.943][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2025-04-05 16:03:52.307][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:52.312][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2025-04-05 16:03:52.319][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2025-04-05 16:03:52.325][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2025-04-05 16:03:52.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:52.331][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:52.333][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:52.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.359][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.372][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:52.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:52.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:52.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:52.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.382][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:52.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:52.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:52.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:52.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:52.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:52.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:52.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:52.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.416][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:52.417][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.431][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:52.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:52.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.439][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:52.440][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:52.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:52.448][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:52.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:52.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:52.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:52.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:52.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.502][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-04-05 16:03:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.536][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:52.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.555][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.567][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.572][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-05 16:03:52.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.603][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.604][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.605][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.615][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.620][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-05 16:03:52.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.651][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.652][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.663][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.664][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-05 16:03:52.683][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:52.683][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:52.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:52.713][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:52.716][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:52.717][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:03:52.718][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:52.719][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:03:52.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:52.725][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:52.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:03:52.727][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:52.729][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:03:52.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.797][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:52.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.816][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.844][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:03:52.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.863][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.874][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.879][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:52.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.910][private$selectFields]
biodb.TRACE[2025-04-05 16:03:52.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:52.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:52.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.922][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:52.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.927][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:52.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.939][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:03:52.940][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:52.941][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:52.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:52.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:52.957][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:52.958][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:03:52.959][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:52.960][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:03:52.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:52.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:52.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:52.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:52.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:52.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:52.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:52.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:52.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:52.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.025][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:53.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.044][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.047][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.056][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.061][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:03:53.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.096][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.108][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.112][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:03:53.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.143][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.155][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.159][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:03:53.172][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:53.173][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:53.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:53.186][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:53.189][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:03:53.190][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:03:53.191][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:03:53.192][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:03:53.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:53.257][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:53.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.276][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.288][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.293][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:03:53.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.324][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.336][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.341][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:03:53.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:53.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.377][private$selectFields]
biodb.TRACE[2025-04-05 16:03:53.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:53.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:53.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.389][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:53.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.393][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:53.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:53.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:53.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:53.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-05 16:03:53.406][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:53.407][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:53.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:53.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:53.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:53.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:53.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:53.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:53.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:53.434][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:53.437][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:53.438][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:53.440][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:53.788][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:03:54.144][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:54.148][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2025-04-05 16:03:54.156][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2025-04-05 16:03:54.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:54.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:54.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:54.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:54.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:54.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:54.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:54.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:54.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:54.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:54.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:54.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:54.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:54.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:54.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:54.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:54.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:54.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:54.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:54.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:54.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:54.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:54.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:54.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:54.241][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-04-05 16:03:54.242][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:54.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2025-04-05 16:03:54.244][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:54.245][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:54.246][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:54.247][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:54.248][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:54.249][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:54.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:54.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:54.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:54.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:54.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:54.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:54.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:54.261][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2025-04-05 16:03:54.263][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:54.264][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:54.266][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2025-04-05 16:03:54.614][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2025-04-05 16:03:54.972][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:54.977][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2025-04-05 16:03:54.984][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2025-04-05 16:03:54.989][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2025-04-05 16:03:54.993][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:54.995][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:54.998][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:55.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:55.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:55.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:55.023][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.035][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:55.036][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:55.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:55.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:55.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:55.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:55.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:55.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:55.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:55.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:55.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:55.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:55.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.078][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:55.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:55.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:55.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:55.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.086][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.093][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:55.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:55.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:55.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:55.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.101][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:55.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:55.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:55.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:55.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:55.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:55.167][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-04-05 16:03:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:55.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:55.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:55.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:55.188][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-04-05 16:03:55.189][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:55.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2025-04-05 16:03:55.192][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:55.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:55.194][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:55.195][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:55.196][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:55.197][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:55.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:55.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:55.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:55.209][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2025-04-05 16:03:55.211][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:55.212][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:55.213][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2025-04-05 16:03:55.561][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2025-04-05 16:03:55.919][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:55.923][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2025-04-05 16:03:55.931][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2025-04-05 16:03:55.936][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2025-04-05 16:03:55.939][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:55.942][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:55.944][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:55.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:55.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:55.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:55.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:55.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:55.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:55.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:55.970][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:55.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.983][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:55.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:55.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:55.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.994][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:55.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:55.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:55.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:55.998][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:56.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:56.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:56.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:56.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:56.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:56.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:56.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:56.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.026][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:56.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:56.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.030][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:56.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.042][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:56.043][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:56.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:56.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:56.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.050][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:56.051][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:56.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:56.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:56.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:56.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:56.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:56.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:56.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:56.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:56.103][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-04-05 16:03:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:56.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:56.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:56.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:56.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:56.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:56.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:56.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:56.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:56.125][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-04-05 16:03:56.126][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:56.127][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2025-04-05 16:03:56.128][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:56.129][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:56.130][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:56.131][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:56.132][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:56.133][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:56.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:56.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:56.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:56.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:56.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:56.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:56.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:56.145][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2025-04-05 16:03:56.148][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:56.149][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:56.150][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2025-04-05 16:03:56.511][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2025-04-05 16:03:56.887][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:56.892][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2025-04-05 16:03:56.899][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2025-04-05 16:03:56.905][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2025-04-05 16:03:56.908][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:56.911][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:56.913][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:56.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:56.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:56.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:56.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:56.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:56.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:56.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:56.939][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:56.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.950][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:56.952][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:56.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.961][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:56.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:56.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:56.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:56.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:56.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:56.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:56.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:56.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:56.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:56.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.007][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:57.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:57.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:57.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:57.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.030][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:57.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:57.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:57.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:57.039][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:57.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:57.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:57.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:57.083][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-04-05 16:03:57.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:57.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:57.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:57.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:57.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:57.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:57.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:57.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:57.104][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-04-05 16:03:57.105][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:57.107][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2025-04-05 16:03:57.108][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:57.109][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:57.110][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:57.111][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:57.112][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:57.113][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:57.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:57.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:57.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:57.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:57.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:57.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:57.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:57.125][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2025-04-05 16:03:57.127][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:57.128][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:57.129][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2025-04-05 16:03:57.491][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2025-04-05 16:03:57.852][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:57.856][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2025-04-05 16:03:57.864][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2025-04-05 16:03:57.869][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2025-04-05 16:03:57.872][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:57.875][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:57.878][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:57.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:57.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:57.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:57.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:57.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:57.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:57.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:57.904][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:57.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:57.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.917][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:57.918][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:57.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.922][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:57.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:57.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:57.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:57.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:57.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:57.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:57.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:57.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:57.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:57.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.957][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:57.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.961][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:57.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:57.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.965][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:57.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:57.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.977][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:57.978][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:57.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:57.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:57.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.985][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:57.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:57.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:57.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:57.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:57.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:57.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:57.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:57.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:57.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:58.047][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-04-05 16:03:58.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:58.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:58.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:58.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:58.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:58.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:58.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:58.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:58.068][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-04-05 16:03:58.069][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:03:58.071][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2025-04-05 16:03:58.072][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:03:58.073][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:03:58.074][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:03:58.075][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:03:58.076][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:03:58.077][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:03:58.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:58.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:58.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:58.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:58.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:58.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:58.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:58.089][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2025-04-05 16:03:58.091][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:58.092][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:58.093][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2025-04-05 16:03:58.451][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2025-04-05 16:03:58.809][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:03:58.814][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2025-04-05 16:03:58.821][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2025-04-05 16:03:58.826][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2025-04-05 16:03:58.829][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:03:58.832][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:03:58.835][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:03:58.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:58.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:58.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:58.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:58.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:58.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:58.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:58.860][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.873][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:58.875][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:58.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:03:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:03:58.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.884][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:58.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:58.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:03:58.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:03:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:58.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:58.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:03:58.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:03:58.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:58.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:58.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:03:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:03:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:58.909][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:03:58.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.913][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:58.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:58.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:03:58.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:03:58.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:58.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:58.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:03:58.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:03:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.937][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:58.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:58.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:03:58.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:03:58.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:58.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:58.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:03:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:03:58.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:58.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:03:58.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:03:58.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:58.991][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-04-05 16:03:58.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:59.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:59.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:03:59.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:03:59.024][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:03:59.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:59.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.043][private$selectFields]
biodb.TRACE[2025-04-05 16:03:59.044][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:59.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:59.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.055][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:03:59.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.091][private$selectFields]
biodb.TRACE[2025-04-05 16:03:59.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:59.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:59.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.116][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:59.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:03:59.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:03:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.147][private$selectFields]
biodb.TRACE[2025-04-05 16:03:59.148][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:03:59.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:03:59.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.159][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:03:59.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.164][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:03:59.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:03:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:03:59.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:03:59.176][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:03:59.177][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:03:59.178][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:03:59.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:03:59.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:03:59.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:03:59.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:03:59.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:03:59.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:03:59.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:03:59.190][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:03:59.193][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:03:59.194][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:03:59.196][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-05 16:03:59.563][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-05 16:04:00.261][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:00.265][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2025-04-05 16:04:00.274][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2025-04-05 16:04:00.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:00.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:00.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:00.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:00.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:00.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:00.360][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-04-05 16:04:00.361][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:00.363][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2025-04-05 16:04:00.364][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:00.365][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:00.366][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:00.367][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:00.368][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:00.369][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:00.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:00.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:00.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:00.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:00.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:00.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:00.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:00.381][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2025-04-05 16:04:00.384][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:00.384][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:00.386][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2025-04-05 16:04:00.742][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2025-04-05 16:04:01.102][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:01.106][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2025-04-05 16:04:01.113][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2025-04-05 16:04:01.119][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2025-04-05 16:04:01.122][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:01.125][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:01.127][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:01.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:01.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:01.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:01.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:01.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:01.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:01.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:01.153][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.166][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:01.167][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:01.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.172][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:01.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:01.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.176][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:01.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:01.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:01.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:01.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:01.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:01.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:01.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:01.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:01.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.202][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:01.203][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:01.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.206][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:01.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:01.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.221][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:01.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:01.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.229][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:01.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:01.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:01.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:01.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:01.238][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:01.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:01.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:01.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:01.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:01.294][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-04-05 16:04:01.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:01.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:01.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:01.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:01.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:01.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:01.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:01.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:01.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:01.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:01.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:01.316][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-04-05 16:04:01.317][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:01.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2025-04-05 16:04:01.320][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:01.321][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:01.322][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:01.323][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:01.324][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:01.324][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:01.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:01.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:01.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:01.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:01.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:01.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:01.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:01.336][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2025-04-05 16:04:01.339][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:01.340][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:01.341][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2025-04-05 16:04:01.702][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2025-04-05 16:04:02.084][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:02.089][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2025-04-05 16:04:02.096][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2025-04-05 16:04:02.101][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2025-04-05 16:04:02.105][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:02.107][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:02.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:02.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:02.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:02.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:02.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:02.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:02.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:02.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:02.136][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.149][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:02.150][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:02.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.159][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:02.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:02.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:02.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:02.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:02.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:02.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:02.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:02.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:02.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:02.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:02.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.189][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:02.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:02.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.193][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.196][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.204][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:02.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:02.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:02.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.212][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:02.213][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:02.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:02.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:02.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:02.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:02.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:02.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:02.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:02.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:02.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:02.266][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-04-05 16:04:02.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:02.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:02.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:02.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:02.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:02.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:02.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:02.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:02.288][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-04-05 16:04:02.289][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:02.291][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2025-04-05 16:04:02.292][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:02.293][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:02.294][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:02.295][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:02.296][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:02.297][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:02.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:02.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:02.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:02.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:02.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:02.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:02.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:02.309][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2025-04-05 16:04:02.312][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:02.313][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:02.314][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2025-04-05 16:04:02.672][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2025-04-05 16:04:03.034][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:03.038][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2025-04-05 16:04:03.045][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2025-04-05 16:04:03.051][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2025-04-05 16:04:03.054][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:03.057][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:03.059][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:03.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:03.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:03.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:03.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:03.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:03.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:03.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:03.085][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.111][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:03.112][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:03.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:03.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:03.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.120][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:03.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:03.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:03.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:03.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:03.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:03.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:03.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:03.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:03.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:03.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:03.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.143][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:03.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:03.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.147][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:03.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:03.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:03.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.162][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:03.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:03.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:03.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:03.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.170][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:03.171][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:03.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:03.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:03.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.178][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:03.179][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:03.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:03.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:03.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:03.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:03.222][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-04-05 16:04:03.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:03.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:03.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:03.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:03.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:03.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:03.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:03.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:03.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:03.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:03.244][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-04-05 16:04:03.245][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:03.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2025-04-05 16:04:03.248][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:03.249][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:03.250][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:03.251][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:03.252][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:03.252][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:03.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:03.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:03.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:03.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:03.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:03.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:03.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:03.264][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2025-04-05 16:04:03.267][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:03.268][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:03.269][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2025-04-05 16:04:03.688][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2025-04-05 16:04:04.049][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:04.053][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2025-04-05 16:04:04.058][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2025-04-05 16:04:04.062][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2025-04-05 16:04:04.064][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:04.065][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:04.067][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:04.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:04.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.102][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:04.104][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:04.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:04.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.114][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:04.115][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:04.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:04.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:04.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:04.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:04.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:04.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:04.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:04.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:04.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:04.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:04.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.145][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:04.146][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:04.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.149][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:04.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:04.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.166][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:04.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:04.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:04.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:04.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.174][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:04.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:04.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:04.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:04.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:04.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:04.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:04.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:04.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:04.242][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-04-05 16:04:04.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:04.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:04.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:04.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:04.265][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-04-05 16:04:04.266][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:04.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2025-04-05 16:04:04.269][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:04.270][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:04.271][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:04.272][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:04.273][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:04.274][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:04.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:04.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:04.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:04.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:04.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:04.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:04.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:04.287][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2025-04-05 16:04:04.289][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:04.290][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:04.292][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2025-04-05 16:04:04.654][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2025-04-05 16:04:05.016][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:05.021][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2025-04-05 16:04:05.028][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2025-04-05 16:04:05.034][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2025-04-05 16:04:05.037][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:05.040][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:05.043][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:05.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:05.070][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.082][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:05.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:05.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:05.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:05.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.093][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:05.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:05.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:05.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:05.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:05.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:05.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:05.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:05.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:05.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.117][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:05.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:05.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.121][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:05.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:05.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.125][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:05.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:05.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.137][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:05.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:05.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:05.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:05.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.145][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:05.146][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:05.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.153][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:05.154][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:05.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:05.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:05.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:05.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:05.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.199][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-04-05 16:04:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:05.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:05.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:05.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:05.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:05.221][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-04-05 16:04:05.222][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:05.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2025-04-05 16:04:05.225][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:05.226][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:05.227][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:05.228][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:05.229][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:05.230][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:05.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:05.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:05.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:05.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:05.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:05.242][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2025-04-05 16:04:05.245][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:05.246][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:05.247][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2025-04-05 16:04:05.604][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2025-04-05 16:04:05.963][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:05.967][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2025-04-05 16:04:05.975][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2025-04-05 16:04:05.980][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2025-04-05 16:04:05.984][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:05.986][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:05.989][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:05.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:05.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:05.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:06.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:06.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:06.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:06.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:06.015][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.028][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:06.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:06.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:06.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:06.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.039][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:06.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:06.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:06.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:06.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:06.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:06.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:06.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:06.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:06.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:06.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:06.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:06.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:06.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:06.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.083][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:06.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:06.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:06.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:06.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.099][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:06.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:06.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:06.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:06.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.107][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:06.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:06.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:06.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:06.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:06.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:06.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:06.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:06.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:06.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:06.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:06.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:06.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:06.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:06.162][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-04-05 16:04:06.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:06.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:06.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:06.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:06.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:06.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:06.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:06.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:06.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:06.184][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-04-05 16:04:06.185][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:06.187][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2025-04-05 16:04:06.188][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:06.189][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:06.190][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:06.191][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:06.192][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:06.193][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:06.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:06.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:06.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:06.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:06.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:06.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:06.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:06.206][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2025-04-05 16:04:06.209][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:06.210][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:06.211][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2025-04-05 16:04:06.568][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2025-04-05 16:04:06.922][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:06.927][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2025-04-05 16:04:06.934][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2025-04-05 16:04:06.940][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2025-04-05 16:04:06.943][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:06.946][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:06.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:06.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:06.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:06.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:06.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:06.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:06.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:06.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:06.976][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:06.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:06.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.988][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:06.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:06.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.994][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:06.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:06.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:06.999][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:07.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:07.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:07.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:07.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:07.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.017][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:07.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:07.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.029][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:07.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:07.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:07.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:07.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.046][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:07.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:07.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:07.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:07.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.054][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:07.055][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:07.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:07.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:07.111][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-04-05 16:04:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:07.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:07.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:07.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:07.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:07.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:07.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:07.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:07.147][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-04-05 16:04:07.148][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:07.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2025-04-05 16:04:07.151][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:07.152][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:07.153][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:07.154][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:07.155][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:07.156][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:07.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:07.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:07.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:07.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:07.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:07.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:07.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:07.168][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2025-04-05 16:04:07.171][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:07.172][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:07.173][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2025-04-05 16:04:07.527][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2025-04-05 16:04:07.878][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:07.883][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2025-04-05 16:04:07.890][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2025-04-05 16:04:07.896][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2025-04-05 16:04:07.899][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:07.901][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:07.904][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:07.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:07.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:07.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:07.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:07.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:07.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:07.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:07.930][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.932][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.942][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:07.944][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:07.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.952][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:07.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:07.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:07.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:07.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:07.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:07.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:07.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:07.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:07.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.976][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:07.977][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:07.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.980][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:07.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:07.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.984][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:07.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.995][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:07.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:07.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:07.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:07.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:08.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.003][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:08.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:08.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:08.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:08.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:08.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:08.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:08.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:08.056][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-04-05 16:04:08.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:08.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:08.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:08.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:08.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:08.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:08.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:08.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:08.078][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-04-05 16:04:08.079][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:08.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2025-04-05 16:04:08.082][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:08.083][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:08.084][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:08.085][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:08.086][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:08.087][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:08.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:08.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:08.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:08.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:08.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:08.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:08.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:08.099][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2025-04-05 16:04:08.101][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:08.102][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:08.104][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2025-04-05 16:04:08.458][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2025-04-05 16:04:08.806][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:08.811][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2025-04-05 16:04:08.818][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2025-04-05 16:04:08.823][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2025-04-05 16:04:08.826][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:08.829][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:08.832][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:08.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:08.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:08.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:08.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:08.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:08.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:08.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:08.858][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.871][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:08.872][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:08.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:08.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:08.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.881][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:08.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:08.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:08.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:08.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:08.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:08.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:08.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:08.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.903][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:08.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:08.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:08.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.931][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:08.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:08.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:08.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:08.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.939][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:08.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:08.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:08.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:08.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:08.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:08.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:08.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:08.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:08.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:08.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:08.991][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-04-05 16:04:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:08.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:08.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:08.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:09.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:09.013][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-04-05 16:04:09.014][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:09.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2025-04-05 16:04:09.016][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:09.017][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:09.018][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:09.019][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:09.020][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:09.021][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:09.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:09.033][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2025-04-05 16:04:09.036][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:09.036][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:09.038][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2025-04-05 16:04:09.394][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2025-04-05 16:04:09.744][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:09.749][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2025-04-05 16:04:09.756][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2025-04-05 16:04:09.761][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2025-04-05 16:04:09.765][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:09.767][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:09.770][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:09.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:09.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.809][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:09.810][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:09.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:09.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:09.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.819][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:09.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:09.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:09.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:09.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:09.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:09.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:09.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:09.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:09.838][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:09.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.841][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:09.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:09.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.856][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:09.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:09.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:09.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:09.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.864][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:09.865][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:09.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:09.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:09.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:09.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:09.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:09.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:09.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:09.917][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-04-05 16:04:09.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:09.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:09.939][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-04-05 16:04:09.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:09.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2025-04-05 16:04:09.943][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:09.944][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:09.945][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:09.946][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:09.947][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:09.948][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:09.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:09.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:09.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:09.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:09.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:09.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:09.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:09.960][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2025-04-05 16:04:09.962][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:09.963][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:09.969][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2025-04-05 16:04:10.327][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2025-04-05 16:04:10.685][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:10.690][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2025-04-05 16:04:10.697][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2025-04-05 16:04:10.702][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2025-04-05 16:04:10.705][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:10.708][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:10.711][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:10.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:10.736][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.749][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:10.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:10.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:10.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:10.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:10.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:10.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:10.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:10.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:10.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:10.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:10.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:10.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:10.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:10.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.788][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:10.789][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:10.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.792][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:10.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:10.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.803][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:10.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:10.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:10.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.811][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:10.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:10.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:10.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:10.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.819][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:10.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:10.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:10.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:10.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:10.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:10.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:10.864][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-04-05 16:04:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:10.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:10.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:10.886][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-04-05 16:04:10.887][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:10.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2025-04-05 16:04:10.889][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:10.890][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:10.891][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:10.892][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:10.893][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:10.894][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:10.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:10.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:10.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:10.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:10.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:10.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:10.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:10.906][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2025-04-05 16:04:10.909][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:10.910][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:10.911][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2025-04-05 16:04:11.267][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2025-04-05 16:04:11.623][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:11.627][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2025-04-05 16:04:11.635][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2025-04-05 16:04:11.640][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2025-04-05 16:04:11.643][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:11.646][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:11.649][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:11.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:11.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:11.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:11.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:11.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:11.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:11.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:11.675][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.688][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:11.689][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:11.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.693][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:11.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.698][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:11.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:11.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:11.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:11.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:11.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:11.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:11.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:11.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:11.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:11.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:11.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:11.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:11.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.727][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:11.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:11.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.743][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:11.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:11.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.751][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:11.752][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:11.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:11.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:11.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:11.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:11.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:11.816][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-04-05 16:04:11.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:11.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:11.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:11.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:11.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:11.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:11.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:11.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:11.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:11.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:11.837][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-04-05 16:04:11.838][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:11.840][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2025-04-05 16:04:11.841][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:11.842][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:11.843][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:11.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:11.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:11.846][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:11.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:11.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:11.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:11.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:11.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:11.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:11.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:11.858][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2025-04-05 16:04:11.860][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:11.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:11.862][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2025-04-05 16:04:12.214][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2025-04-05 16:04:12.566][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:12.570][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2025-04-05 16:04:12.577][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2025-04-05 16:04:12.583][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2025-04-05 16:04:12.586][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:12.588][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:12.591][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:12.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:12.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:12.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:12.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:12.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:12.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:12.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:12.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.619][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.629][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:12.631][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:12.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:12.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:12.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:12.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:12.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:12.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:12.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:12.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:12.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.658][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:12.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:12.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:12.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:12.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:12.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.669][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:12.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:12.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:12.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:12.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.685][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:12.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:12.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:12.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:12.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:12.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:12.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.700][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:12.701][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:12.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:12.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:12.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:12.746][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-04-05 16:04:12.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:12.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:12.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:12.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:12.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:12.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:12.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:12.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:12.768][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-04-05 16:04:12.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:12.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2025-04-05 16:04:12.772][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:12.773][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:12.774][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:12.775][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:12.776][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:12.777][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:12.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:12.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:12.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:12.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:12.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:12.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:12.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:12.789][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2025-04-05 16:04:12.791][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:12.792][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:12.794][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2025-04-05 16:04:13.162][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2025-04-05 16:04:13.526][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:13.530][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2025-04-05 16:04:13.537][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2025-04-05 16:04:13.543][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2025-04-05 16:04:13.546][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:13.549][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:13.551][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:13.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:13.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:13.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:13.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:13.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:13.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:13.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:13.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:13.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:13.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:13.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:13.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.611][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:13.612][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:13.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:13.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:13.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:13.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:13.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:13.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:13.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:13.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:13.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.638][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:13.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:13.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.642][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:13.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:13.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:13.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:13.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.661][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:13.662][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:13.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:13.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:13.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:13.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:13.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:13.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:13.714][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-04-05 16:04:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:13.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:13.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:13.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:13.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:13.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:13.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:13.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:13.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:13.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:13.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:13.736][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-04-05 16:04:13.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:13.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2025-04-05 16:04:13.739][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:13.740][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:13.741][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:13.742][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:13.743][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:13.744][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:13.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:13.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:13.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:13.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:13.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:13.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:13.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:13.756][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2025-04-05 16:04:13.759][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:13.760][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:13.761][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2025-04-05 16:04:14.118][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2025-04-05 16:04:14.475][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:14.480][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2025-04-05 16:04:14.487][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2025-04-05 16:04:14.492][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2025-04-05 16:04:14.495][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:14.498][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:14.501][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:14.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:14.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:14.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:14.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:14.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:14.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:14.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:14.527][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.529][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.540][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:14.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:14.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.550][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:14.551][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:14.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:14.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:14.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:14.560][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:14.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:14.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:14.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:14.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.575][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:14.576][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:14.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.579][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:14.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:14.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.587][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.595][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:14.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:14.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:14.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.603][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:14.604][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:14.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:14.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:14.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.610][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:14.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:14.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:14.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:14.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:14.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:14.664][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-04-05 16:04:14.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:14.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:14.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:14.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:14.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:14.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:14.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:14.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:14.686][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-04-05 16:04:14.687][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:14.688][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2025-04-05 16:04:14.689][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:14.690][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:14.691][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:14.692][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:14.693][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:14.694][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:14.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:14.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:14.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:14.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:14.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:14.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:14.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:14.706][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2025-04-05 16:04:14.708][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:14.709][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:14.711][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2025-04-05 16:04:15.073][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2025-04-05 16:04:15.468][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:15.473][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2025-04-05 16:04:15.480][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2025-04-05 16:04:15.485][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2025-04-05 16:04:15.488][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:15.491][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:15.494][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:15.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:15.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:15.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:15.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:15.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:15.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:15.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:15.520][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.522][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.532][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:15.534][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:15.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:15.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.543][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:15.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:15.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:15.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:15.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:15.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:15.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:15.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:15.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:15.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.568][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:15.569][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:15.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.572][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:15.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:15.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.576][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:15.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:15.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.588][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:15.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:15.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.596][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:15.597][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:15.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.604][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:15.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:15.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:15.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:15.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:15.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:15.650][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-04-05 16:04:15.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:15.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:15.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:15.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:15.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:15.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:15.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:15.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:15.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:15.672][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-04-05 16:04:15.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:15.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2025-04-05 16:04:15.675][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:15.676][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:15.677][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:15.678][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:15.679][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:15.680][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:15.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:15.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:15.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:15.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:15.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:15.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:15.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:15.693][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2025-04-05 16:04:15.695][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:15.696][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:15.697][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2025-04-05 16:04:16.057][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2025-04-05 16:04:16.412][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:16.416][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2025-04-05 16:04:16.424][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2025-04-05 16:04:16.429][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2025-04-05 16:04:16.432][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:16.435][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:16.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:16.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:16.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:16.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:16.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:16.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:16.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:16.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:16.464][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.477][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:16.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:16.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:16.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:16.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.499][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:16.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:16.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:16.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:16.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:16.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:16.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:16.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:16.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:16.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:16.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:16.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.522][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:16.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:16.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.526][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:16.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:16.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.530][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:16.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:16.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.541][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:16.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:16.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:16.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:16.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.549][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:16.550][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:16.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:16.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:16.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:16.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:16.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:16.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:16.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:16.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:16.601][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-04-05 16:04:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:16.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:16.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:16.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:16.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:16.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:16.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:16.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:16.623][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-04-05 16:04:16.624][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:16.625][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2025-04-05 16:04:16.626][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:16.627][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:16.628][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:16.629][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:16.630][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:16.631][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:16.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:16.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:16.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:16.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:16.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:16.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:16.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:16.643][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2025-04-05 16:04:16.645][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:16.646][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:16.648][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2025-04-05 16:04:17.013][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2025-04-05 16:04:17.443][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:17.448][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2025-04-05 16:04:17.455][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2025-04-05 16:04:17.461][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2025-04-05 16:04:17.464][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:17.466][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:17.469][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:17.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:17.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:17.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:17.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:17.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:17.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:17.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:17.495][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.508][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:17.510][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:17.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.519][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:17.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:17.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:17.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:17.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:17.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:17.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:17.545][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:17.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.548][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:17.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:17.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.552][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:17.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.564][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:17.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:17.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.572][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:17.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:17.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.576][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:17.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.580][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:17.581][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:17.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:17.635][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-04-05 16:04:17.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:17.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:17.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:17.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:17.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:17.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:17.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:17.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:17.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:17.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:17.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:17.658][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-04-05 16:04:17.659][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:17.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2025-04-05 16:04:17.661][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:17.662][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:17.663][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:17.664][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:17.665][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:17.666][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:17.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:17.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:17.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:17.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:17.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:17.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:17.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:17.678][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2025-04-05 16:04:17.681][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:17.682][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:17.683][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2025-04-05 16:04:18.056][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2025-04-05 16:04:18.565][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:18.569][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2025-04-05 16:04:18.577][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2025-04-05 16:04:18.582][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2025-04-05 16:04:18.585][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:18.588][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:18.590][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:18.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:18.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:18.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:18.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:18.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:18.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:18.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:18.616][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.629][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:18.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:18.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:18.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:18.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:18.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:18.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:18.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:18.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:18.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:18.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.657][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:18.658][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:18.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:18.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:18.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.664][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:18.665][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:18.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.668][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:18.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:18.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:18.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:18.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:18.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:18.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:18.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:18.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:18.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:18.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:18.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:18.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:18.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:18.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:18.745][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-04-05 16:04:18.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:18.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:18.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:18.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:18.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:18.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:18.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:18.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:18.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:18.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:18.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:18.766][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-04-05 16:04:18.767][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:18.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2025-04-05 16:04:18.770][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:18.771][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:18.772][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:18.773][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:18.774][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:18.775][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:18.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:18.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:18.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:18.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:18.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:18.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:18.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:18.787][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2025-04-05 16:04:18.789][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:18.790][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:18.792][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2025-04-05 16:04:19.159][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2025-04-05 16:04:19.517][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:19.521][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2025-04-05 16:04:19.528][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2025-04-05 16:04:19.534][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2025-04-05 16:04:19.537][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:19.540][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:19.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:19.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:19.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:19.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:19.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:19.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:19.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:19.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:19.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.580][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:19.582][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:19.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.586][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:19.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:19.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.591][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:19.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:19.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:19.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:19.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:19.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:19.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:19.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:19.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:19.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:19.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:19.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:19.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:19.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.632][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:19.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:19.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.636][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.647][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:19.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:19.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:19.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:19.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.655][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:19.656][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:19.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:19.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:19.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.662][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:19.663][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:19.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:19.707][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-04-05 16:04:19.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:19.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:19.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:19.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:19.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:19.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:19.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:19.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:19.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:19.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:19.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:19.728][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-04-05 16:04:19.729][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:19.731][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2025-04-05 16:04:19.732][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:19.733][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:19.734][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:19.735][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:19.736][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:19.737][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:19.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:19.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:19.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:19.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:19.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:19.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:19.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:19.749][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2025-04-05 16:04:19.751][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:19.752][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:19.754][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2025-04-05 16:04:20.108][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2025-04-05 16:04:20.460][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:20.465][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2025-04-05 16:04:20.472][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2025-04-05 16:04:20.477][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2025-04-05 16:04:20.480][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:20.483][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:20.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:20.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:20.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:20.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:20.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:20.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:20.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:20.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:20.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.524][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:20.526][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:20.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:20.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.535][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:20.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:20.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:20.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:20.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:20.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:20.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:20.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:20.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:20.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:20.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:20.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:20.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.560][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:20.561][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:20.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.564][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:20.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:20.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.568][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:20.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:20.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:20.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:20.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:20.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.588][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:20.589][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:20.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.595][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:20.596][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:20.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:20.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:20.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:20.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:20.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:20.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:20.641][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-04-05 16:04:20.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:20.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:20.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:20.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:20.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:20.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:20.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:20.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:20.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:20.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:20.672][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-04-05 16:04:20.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:20.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2025-04-05 16:04:20.675][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:20.676][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:20.677][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:20.678][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:20.679][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:20.680][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:20.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:20.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:20.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:20.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:20.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:20.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:20.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:20.692][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2025-04-05 16:04:20.694][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:20.695][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:20.696][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2025-04-05 16:04:21.054][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2025-04-05 16:04:21.406][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:21.410][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2025-04-05 16:04:21.417][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2025-04-05 16:04:21.423][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2025-04-05 16:04:21.426][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:21.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:21.431][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:21.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:21.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:21.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:21.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:21.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:21.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:21.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:21.457][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.470][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:21.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:21.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:21.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:21.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:21.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:21.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:21.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:21.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:21.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:21.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:21.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:21.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:21.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.509][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:21.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:21.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.524][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:21.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:21.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:21.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:21.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.532][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:21.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:21.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:21.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:21.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.540][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:21.541][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:21.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:21.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:21.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:21.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:21.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:21.585][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-04-05 16:04:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:21.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:21.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:21.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:21.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:21.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:21.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:21.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:21.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:21.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:21.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:21.607][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-04-05 16:04:21.608][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:21.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2025-04-05 16:04:21.611][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:21.612][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:21.613][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:21.614][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:21.615][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:21.616][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:21.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:21.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:21.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:21.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:21.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:21.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:21.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:21.628][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2025-04-05 16:04:21.630][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:21.631][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:21.632][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2025-04-05 16:04:21.985][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2025-04-05 16:04:22.351][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:22.355][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2025-04-05 16:04:22.362][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2025-04-05 16:04:22.368][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2025-04-05 16:04:22.371][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:22.374][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:22.376][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:22.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:22.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:22.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:22.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:22.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:22.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:22.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:22.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.415][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:22.416][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:22.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:22.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:22.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.426][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:22.427][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:22.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:22.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:22.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:22.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:22.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:22.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:22.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:22.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:22.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:22.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:22.463][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:22.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.466][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:22.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:22.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.470][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:22.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:22.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.481][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:22.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:22.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.489][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:22.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:22.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.497][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:22.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:22.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:22.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:22.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:22.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:22.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:22.551][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-04-05 16:04:22.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:22.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:22.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:22.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:22.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:22.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:22.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:22.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:22.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:22.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:22.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:22.578][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-04-05 16:04:22.579][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:22.581][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2025-04-05 16:04:22.582][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:22.584][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:22.585][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:22.586][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:22.587][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:22.588][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:22.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:22.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:22.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:22.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:22.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:22.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:22.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:22.602][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2025-04-05 16:04:22.605][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:22.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:22.608][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2025-04-05 16:04:22.963][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2025-04-05 16:04:23.316][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:23.322][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2025-04-05 16:04:23.330][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2025-04-05 16:04:23.337][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2025-04-05 16:04:23.340][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:23.343][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:23.346][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:23.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:23.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:23.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:23.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:23.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:23.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:23.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:23.374][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.386][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:23.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:23.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.397][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:23.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:23.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:23.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:23.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:23.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:23.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:23.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.416][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.423][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:23.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:23.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.428][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:23.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:23.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.432][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:23.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:23.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.445][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:23.446][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:23.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:23.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.453][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:23.454][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:23.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:23.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.462][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:23.463][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:23.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:23.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:23.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:23.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:23.511][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-04-05 16:04:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:23.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:23.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:23.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:23.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:23.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:23.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:23.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:23.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:23.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:23.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:23.546][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-04-05 16:04:23.551][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:23.553][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2025-04-05 16:04:23.555][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:23.556][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:23.557][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:23.558][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:23.559][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:23.560][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:23.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:23.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:23.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:23.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:23.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:23.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:23.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:23.572][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2025-04-05 16:04:23.575][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:23.576][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:23.577][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2025-04-05 16:04:23.935][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2025-04-05 16:04:24.287][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:24.292][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2025-04-05 16:04:24.299][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2025-04-05 16:04:24.305][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2025-04-05 16:04:24.308][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:24.311][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:24.314][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:24.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:24.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:24.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:24.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:24.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:24.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:24.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:24.342][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:24.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:24.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:24.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:24.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.363][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:24.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:24.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:24.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:24.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:24.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:24.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:24.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:24.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:24.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:24.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:24.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:24.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.388][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:24.389][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:24.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:24.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:24.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.396][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:24.397][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:24.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.399][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:24.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:24.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.411][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:24.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:24.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:24.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:24.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.418][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:24.419][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:24.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:24.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:24.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:24.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:24.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:24.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:24.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:24.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:24.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:24.471][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-04-05 16:04:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:24.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:24.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:24.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:24.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:24.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:24.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:24.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:24.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:24.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:24.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:24.493][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-04-05 16:04:24.494][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-05 16:04:24.495][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2025-04-05 16:04:24.496][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-05 16:04:24.497][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-05 16:04:24.498][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-05 16:04:24.499][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-05 16:04:24.500][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-05 16:04:24.501][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-05 16:04:24.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:24.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:24.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:24.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:24.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:24.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:24.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:24.514][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2025-04-05 16:04:24.517][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-05 16:04:24.518][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-05 16:04:24.519][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2025-04-05 16:04:24.876][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2025-04-05 16:04:25.233][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-05 16:04:25.237][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2025-04-05 16:04:25.244][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2025-04-05 16:04:25.250][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2025-04-05 16:04:25.253][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-05 16:04:25.256][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-05 16:04:25.258][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-05 16:04:25.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.286][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.297][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:25.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:25.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:25.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.307][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:25.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:25.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:25.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:25.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:25.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:25.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:25.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:25.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:25.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:25.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:25.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:25.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:25.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.337][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:25.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:25.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-05 16:04:25.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.364][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:25.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:25.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:25.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:25.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-05 16:04:25.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:25.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:25.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:25.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:25.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.423][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-04-05 16:04:25.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.476][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:25.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.495][private$selectFields]
biodb.TRACE[2025-04-05 16:04:25.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:25.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:25.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.507][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.512][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:25.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.543][private$selectFields]
biodb.TRACE[2025-04-05 16:04:25.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:25.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:25.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.555][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.560][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.573][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:04:25.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.592][private$selectFields]
biodb.TRACE[2025-04-05 16:04:25.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:25.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:25.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.604][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.608][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.621][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:04:25.622][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:25.623][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:25.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:25.636][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:25.638][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:25.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-05 16:04:25.641][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:25.642][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-05 16:04:25.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.734][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:25.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.753][private$selectFields]
biodb.TRACE[2025-04-05 16:04:25.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:25.755][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:25.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.765][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.769][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.782][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:04:25.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.801][private$selectFields]
biodb.TRACE[2025-04-05 16:04:25.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:25.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:25.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.813][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.817][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:25.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:04:25.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.849][private$selectFields]
biodb.TRACE[2025-04-05 16:04:25.850][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:25.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:25.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.861][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:25.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.865][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:25.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:04:25.879][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:25.880][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:25.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:25.908][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:25.911][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:25.912][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-05 16:04:25.913][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:25.915][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-05 16:04:25.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:25.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:25.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:25.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:25.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:25.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:25.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:25.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.088][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:26.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.107][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.119][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:04:26.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.156][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.168][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.173][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:04:26.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.205][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.226][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.231][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-05 16:04:26.244][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:26.245][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:26.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:26.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:26.282][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:26.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2025-04-05 16:04:26.284][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:26.285][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2025-04-05 16:04:26.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.385][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:26.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.408][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.433][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-05 16:04:26.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.474][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.487][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.492][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:26.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.527][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.540][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.545][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-05 16:04:26.559][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:26.560][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:26.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:26.589][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:26.610][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:26.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2025-04-05 16:04:26.612][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:26.613][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2025-04-05 16:04:26.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.722][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:26.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.741][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.742][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.744][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-05 16:04:26.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.798][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.799][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.800][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.811][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.815][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.828][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-05 16:04:26.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.847][private$selectFields]
biodb.TRACE[2025-04-05 16:04:26.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:26.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:26.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.859][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:26.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.863][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:26.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-05 16:04:26.882][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:26.883][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:26.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:26.910][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:26.929][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:26.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:04:26.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:26.933][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:04:26.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:26.938][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:26.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:04:26.940][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:26.942][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:04:26.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:26.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:26.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:26.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:26.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:26.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:26.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:26.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:26.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:26.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:26.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.006][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:27.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.026][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.038][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.043][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:04:27.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.075][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.087][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.091][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.104][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:04:27.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.123][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.124][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.135][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.139][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:04:27.153][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:27.153][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:27.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:27.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:27.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:27.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:04:27.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:27.178][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:04:27.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.241][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:27.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.260][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.271][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.272][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.276][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:27.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.307][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.319][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:04:27.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.355][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.372][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:04:27.385][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:27.386][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:27.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:27.399][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:27.402][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:27.403][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:04:27.404][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:27.405][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:04:27.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.475][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:27.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.494][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.506][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.511][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:04:27.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.540][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.541][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.542][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.553][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.558][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-05 16:04:27.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.589][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.601][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.605][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-05 16:04:27.619][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:27.620][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:27.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:27.647][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:27.650][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:27.652][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2025-04-05 16:04:27.653][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:27.654][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2025-04-05 16:04:27.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:27.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:27.825][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:27.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.844][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.856][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.860][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.872][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-05 16:04:27.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.891][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.903][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.908][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.921][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-05 16:04:27.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.940][private$selectFields]
biodb.TRACE[2025-04-05 16:04:27.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:27.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:27.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.952][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:27.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.956][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:27.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:27.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-05 16:04:27.970][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:27.970][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:27.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:27.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:27.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:27.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:27.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:27.983][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:27.986][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:27.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2025-04-05 16:04:27.989][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:27.990][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2025-04-05 16:04:27.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:27.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:27.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.622][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:28.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.646][private$selectFields]
biodb.TRACE[2025-04-05 16:04:28.647][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:28.648][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:28.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.658][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.663][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:28.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-05 16:04:28.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.693][private$selectFields]
biodb.TRACE[2025-04-05 16:04:28.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:28.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:28.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.705][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.709][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.722][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-05 16:04:28.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.740][private$selectFields]
biodb.TRACE[2025-04-05 16:04:28.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:28.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:28.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.752][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.756][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-05 16:04:28.770][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:28.771][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:28.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:28.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:28.786][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:28.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-05 16:04:28.789][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:28.790][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-05 16:04:28.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:28.879][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:28.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.898][private$selectFields]
biodb.TRACE[2025-04-05 16:04:28.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:28.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:28.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.911][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.915][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.928][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-05 16:04:28.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.953][private$selectFields]
biodb.TRACE[2025-04-05 16:04:28.954][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:28.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:28.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.965][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:28.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.969][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:28.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-05 16:04:28.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:28.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:28.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:28.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:28.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:28.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:28.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:28.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:29.000][private$selectFields]
biodb.TRACE[2025-04-05 16:04:29.001][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:29.002][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:29.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:29.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:29.012][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-05 16:04:29.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.016][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-05 16:04:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.028][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-05 16:04:29.029][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:29.030][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:04:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:29.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.049][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:29.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:29.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:29.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:04:29.059][biodb::testThat]
biodb.INFO [2025-04-05 16:04:29.060][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-04-05 16:04:29.061][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-05 16:04:29.062][biodb::testThat]
biodb.TRACE[2025-04-05 16:04:29.065][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:04:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:04:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:04:29.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:04:29.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.072][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-05 16:04:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-05 16:04:29.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:29.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:29.134][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:29.137][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:29.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:04:29.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:29.141][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:04:29.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:29.164][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:29.167][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:29.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:04:29.169][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:29.171][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:04:29.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:29.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:29.214][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:29.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.318][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:29.319][private$selectFields]
biodb.TRACE[2025-04-05 16:04:29.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:29.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:29.322][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:29.323][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.326][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.327][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.334][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.353][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.356][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.359][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.363][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.367][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.370][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.371][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.378][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.389][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.390][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.393][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.394][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.400][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.401][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.404][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.411][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:29.412][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:29.413][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.424][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.432][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.433][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.435][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.440][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.443][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.444][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.446][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.451][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.454][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.592][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-05 16:04:29.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.692][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:29.692][private$selectFields]
biodb.TRACE[2025-04-05 16:04:29.693][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:29.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:29.695][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:29.696][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.700][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.701][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.707][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.715][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.718][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.722][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.729][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.730][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.733][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.740][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.744][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.745][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.751][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.755][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.756][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.762][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.773][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.774][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.777][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.781][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.782][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.784][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:29.785][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:29.786][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.790][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.791][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.797][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.809][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.812][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.825][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.826][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.829][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.836][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:29.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:29.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:29.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:29.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:29.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:29.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.978][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-05 16:04:29.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:29.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:29.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:29.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:29.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:29.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:29.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:29.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:29.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:29.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:29.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.056][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.078][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:30.079][private$selectFields]
biodb.TRACE[2025-04-05 16:04:30.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:30.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:30.082][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:30.083][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.086][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.087][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.114][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.115][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.121][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.125][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.129][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.132][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.136][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.137][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.143][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.147][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.148][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.150][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.154][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.155][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.158][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.159][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.161][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.165][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.169][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.176][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:30.177][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:30.178][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.179][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.182][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.182][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.189][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.197][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.207][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.211][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.218][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:30.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.319][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:30.352][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:30.352][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:30.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:30.366][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:30.369][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:30.370][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:04:30.372][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:30.373][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:04:30.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:30.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:30.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:30.424][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:30.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:04:30.427][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:30.428][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:04:30.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:30.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:30.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:30.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:30.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:30.499][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:30.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:30.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.616][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:30.617][private$selectFields]
biodb.TRACE[2025-04-05 16:04:30.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:30.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:30.620][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:30.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.625][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.626][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.633][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.645][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.646][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.658][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.659][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.662][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.674][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.682][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.694][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.695][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.698][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.707][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.711][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.733][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:30.734][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:30.735][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.739][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.747][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.756][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.759][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.760][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.763][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.771][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.783][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.857][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:30.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:30.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.927][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:30.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:30.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:30.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:30.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:30.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:30.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:30.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:30.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:30.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:30.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:30.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:30.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:30.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.986][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:30.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:30.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.032][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:31.033][private$selectFields]
biodb.TRACE[2025-04-05 16:04:31.034][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:31.035][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:31.036][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:31.037][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.041][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.062][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.063][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.070][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.073][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.077][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.078][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.080][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.084][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.091][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.095][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.096][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.106][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.113][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.117][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.120][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.121][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.124][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:31.125][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:31.126][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.129][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.137][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.148][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.149][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.152][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.159][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.160][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.163][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.167][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.170][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.239][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:31.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.372][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.416][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:31.417][private$selectFields]
biodb.TRACE[2025-04-05 16:04:31.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:31.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:31.420][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:31.421][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.424][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.425][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.432][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.447][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.454][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.455][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.458][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.462][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.463][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.465][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.469][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.477][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.489][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:31.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.491][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.502][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.506][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.507][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.510][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:31.511][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:31.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.515][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.537][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.541][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.542][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.549][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.550][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.552][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:31.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:31.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.649][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:31.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:31.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:31.688][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:31.689][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:31.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:31.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:31.706][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:31.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:04:31.709][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:31.710][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:04:31.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:31.882][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:31.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:04:31.884][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:31.885][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:04:31.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:31.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:31.955][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:31.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:31.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:31.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:31.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:31.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:31.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:31.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:31.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:31.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:31.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:31.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.055][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:32.056][private$selectFields]
biodb.TRACE[2025-04-05 16:04:32.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:32.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:32.059][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:32.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.064][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.071][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.079][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.086][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.094][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.095][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.097][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.101][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.102][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.105][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.108][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.109][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.116][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.127][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.128][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.131][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.138][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.142][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.146][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.149][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:32.150][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:32.151][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.155][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.162][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.173][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.177][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.178][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.194][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.205][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:32.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.274][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.308][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-05 16:04:32.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:32.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:32.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:32.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:32.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:32.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:32.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.369][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.403][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.448][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:32.449][private$selectFields]
biodb.TRACE[2025-04-05 16:04:32.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:32.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:32.451][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:32.452][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.456][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.463][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.483][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.491][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.494][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.499][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.502][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.505][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.506][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.512][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.516][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.517][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.523][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.524][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.527][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.534][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.535][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.538][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.545][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:32.546][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:32.547][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.551][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.558][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.569][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.576][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.583][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.587][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-05 16:04:32.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:32.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:32.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:32.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:32.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:32.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:32.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:32.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.823][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:32.824][private$selectFields]
biodb.TRACE[2025-04-05 16:04:32.825][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:32.826][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:32.827][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:32.828][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.831][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.832][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.839][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.840][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.850][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.860][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.864][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.865][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.871][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.875][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.876][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:32.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.897][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.905][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.908][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.912][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.913][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.916][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:32.917][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:32.918][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.929][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:32.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:32.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:32.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.940][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:32.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.944][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:32.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.947][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.948][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:32.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.951][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:32.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:32.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.955][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:32.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:32.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.958][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:32.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:32.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:33.095][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:33.096][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:33.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:33.114][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:33.117][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:33.118][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-05 16:04:33.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:33.120][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-05 16:04:33.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:33.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:33.143][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:33.146][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:33.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-05 16:04:33.148][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:33.150][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-05 16:04:33.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:33.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:33.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:33.193][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:33.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.252][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.301][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:33.302][private$selectFields]
biodb.TRACE[2025-04-05 16:04:33.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:33.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:33.305][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:33.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.309][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.310][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.317][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.328][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.329][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.332][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.333][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.339][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.343][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.346][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.356][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.357][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.360][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.364][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.371][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.382][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.383][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.393][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.394][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.396][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.404][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.405][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.407][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:33.408][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:33.409][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.413][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.420][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.431][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.438][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.439][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.442][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.446][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.449][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:33.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-05 16:04:33.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.644][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.693][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:33.694][private$selectFields]
biodb.TRACE[2025-04-05 16:04:33.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:33.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:33.696][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:33.697][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.701][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.708][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.719][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.720][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.723][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.730][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.731][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.734][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.741][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.742][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.748][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.755][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.759][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.760][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.770][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.778][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.781][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.785][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.789][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.790][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:33.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.793][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:33.794][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:33.795][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.798][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.806][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.817][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.828][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.832][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.835][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.836][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.839][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:33.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:33.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:33.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:33.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:33.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:33.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.908][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:33.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-05 16:04:33.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:33.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:33.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:33.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:33.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:33.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:33.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.093][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:34.094][private$selectFields]
biodb.TRACE[2025-04-05 16:04:34.095][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:34.096][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:34.097][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:34.098][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.099][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.102][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.103][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.109][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.117][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.120][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.121][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.124][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.135][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.139][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.140][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.142][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.143][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.146][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.150][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.151][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.157][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.172][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.180][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.191][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.192][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.194][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:34.195][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:34.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.200][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.201][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.207][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.218][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.231][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.232][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.240][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.242][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.254][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.372][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:34.372][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:34.373][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:34.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:34.387][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:34.390][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:34.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-05 16:04:34.393][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:34.394][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-05 16:04:34.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:34.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:34.439][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:34.441][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:34.443][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-05 16:04:34.444][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:34.445][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-05 16:04:34.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:34.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:34.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:34.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:34.511][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:34.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.575][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.623][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:34.624][private$selectFields]
biodb.TRACE[2025-04-05 16:04:34.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:34.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:34.627][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:34.628][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.631][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.639][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.647][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.654][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.661][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.662][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.665][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.668][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.672][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.673][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.676][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.687][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.698][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.702][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.706][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.709][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.713][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.720][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.721][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:34.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.724][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:34.725][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:34.726][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.729][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.730][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.737][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.740][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.752][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.760][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.771][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:34.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.849][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:34.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:34.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.918][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:34.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:34.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:34.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:34.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:34.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:34.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:34.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:34.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:34.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:34.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:34.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:34.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:34.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:34.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:34.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:34.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.026][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:35.027][private$selectFields]
biodb.TRACE[2025-04-05 16:04:35.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:35.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:35.030][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:35.030][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.034][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.042][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.053][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.054][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.056][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.064][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.067][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.068][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.075][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.076][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.078][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.082][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.089][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.110][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.117][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.121][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.124][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.125][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.128][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.129][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.132][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:35.132][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:35.133][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.137][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.144][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.145][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.155][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.156][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.159][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.162][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.166][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.167][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.170][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.171][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.173][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.174][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.177][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:35.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:35.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.434][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:35.435][private$selectFields]
biodb.TRACE[2025-04-05 16:04:35.436][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:35.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:35.438][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:35.439][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.442][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.443][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.449][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.464][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.471][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.472][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.475][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.482][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.483][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.489][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.497][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.504][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.508][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.509][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:35.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.512][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.519][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.526][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.527][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.530][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.531][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:35.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.534][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:35.535][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:35.536][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.539][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.540][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.547][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.558][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.559][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.565][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.569][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.576][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:35.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:35.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:35.714][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:35.715][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:35.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:35.728][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:35.731][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:35.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-05 16:04:35.734][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:35.735][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-05 16:04:35.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:35.905][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:35.906][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-05 16:04:35.907][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:35.909][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-05 16:04:35.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:35.978][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:35.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:35.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:35.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:35.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:35.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:35.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:35.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:35.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:35.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:35.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:35.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:35.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.036][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.084][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:36.085][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.087][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.088][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:36.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.092][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.093][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.100][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.101][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.111][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.112][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.114][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.115][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.122][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.125][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.129][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.130][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.133][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.134][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.136][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.140][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.147][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.162][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.167][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.170][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.173][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.178][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.181][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.181][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.184][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:36.185][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:36.186][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.190][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.191][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.197][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.198][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.209][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.212][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.219][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.220][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.223][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.230][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.250][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-05 16:04:36.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.485][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:36.486][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.487][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.488][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.489][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:36.490][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.493][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.501][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.512][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.515][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.523][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.524][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.526][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.534][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.535][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.547][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.548][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.554][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.565][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.566][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.569][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.576][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.577][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.587][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.588][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.591][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:36.592][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:36.593][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.596][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.597][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.604][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.611][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.612][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.615][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.622][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.626][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.629][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.630][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.633][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:36.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.653][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.765][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-05 16:04:36.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:36.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:36.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:36.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:36.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:36.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:36.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:36.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.878][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:36.878][private$selectFields]
biodb.TRACE[2025-04-05 16:04:36.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:36.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:36.881][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:36.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.893][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.904][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.907][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.915][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.923][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.926][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.927][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.929][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.933][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.940][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.941][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:36.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.955][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:36.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:36.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.963][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:36.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.965][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.966][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:36.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:36.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:36.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:36.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.974][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.975][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:36.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.977][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:36.978][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:36.979][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:36.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:36.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.983][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:36.984][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:36.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:36.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.990][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:36.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:36.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:36.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:36.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:36.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:36.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:36.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.001][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.002][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.009][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.010][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.012][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.020][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:37.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:37.157][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:37.158][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:04:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:37.220][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:37.223][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:37.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:04:37.225][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:37.227][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:04:37.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:37.232][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:37.233][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:04:37.234][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:37.236][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:04:37.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:37.300][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:37.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.360][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.401][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:37.402][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.403][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.404][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.405][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:37.405][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.415][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.416][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.431][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.433][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.434][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.437][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.444][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.448][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.455][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.459][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.466][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.477][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.478][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.488][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.492][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.499][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:37.500][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:37.501][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.504][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.512][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.520][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.523][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.526][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.534][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.535][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.537][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.545][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:37.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.614][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.621][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:37.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:37.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:37.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:37.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:37.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:37.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:37.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.751][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.792][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:37.792][private$selectFields]
biodb.TRACE[2025-04-05 16:04:37.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:37.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:37.795][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:37.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.800][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.807][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.822][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.829][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.830][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.833][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.840][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.844][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.852][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.867][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.874][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.875][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.878][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.885][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:37.886][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:37.887][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.891][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.892][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.899][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:37.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.913][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:37.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.917][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.918][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:37.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.921][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.922][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:37.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.925][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:37.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:37.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:37.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:37.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.932][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.952][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:37.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.081][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-05 16:04:38.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.184][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:38.185][private$selectFields]
biodb.TRACE[2025-04-05 16:04:38.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:38.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:38.187][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:38.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.192][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.200][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.213][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.215][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.223][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.227][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.231][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.232][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.234][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.238][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.239][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.257][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.258][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.268][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.271][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.297][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.300][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:38.301][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:38.302][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.305][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.306][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.313][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.331][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.338][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.342][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:38.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:38.474][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:38.475][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:38.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:38.489][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:38.492][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:38.494][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:04:38.495][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:38.496][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:04:38.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:38.562][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:38.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:38.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:38.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:38.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:38.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:38.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:38.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:38.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.699][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:38.700][private$selectFields]
biodb.TRACE[2025-04-05 16:04:38.701][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:38.702][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:38.703][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:38.704][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.705][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.708][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.709][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.716][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.724][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.725][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.732][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.733][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.741][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.745][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.757][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.773][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.781][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.789][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.790][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.793][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.796][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.798][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.800][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:38.802][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:38.803][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.807][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.815][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.823][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.824][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.831][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.835][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.839][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.843][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.847][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.848][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.851][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:38.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:38.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:38.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:38.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:38.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:38.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:38.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:38.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:38.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:39.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.104][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.105][private$selectFields]
biodb.TRACE[2025-04-05 16:04:39.106][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:39.107][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:39.108][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.109][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.112][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.120][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.123][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.131][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.132][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.134][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.142][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.143][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.146][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.153][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.157][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.158][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.164][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.176][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.183][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.184][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.186][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.190][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.197][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:39.198][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:39.199][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.203][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.210][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.223][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.227][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.234][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.235][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.238][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.245][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.257][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.261][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:39.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.453][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.476][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.476][private$selectFields]
biodb.TRACE[2025-04-05 16:04:39.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:39.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:39.479][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.480][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.484][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.491][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.508][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.509][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.512][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.519][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.527][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.528][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.530][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.534][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.556][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.563][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.567][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.574][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:39.575][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:39.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.580][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.598][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.605][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.609][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.613][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.614][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.617][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:39.749][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:39.750][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:39.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:39.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:39.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:39.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:04:39.769][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:39.771][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:04:39.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:39.840][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:39.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:39.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:39.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:39.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:39.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:39.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:39.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:39.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.923][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.942][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.943][private$selectFields]
biodb.TRACE[2025-04-05 16:04:39.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:39.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:39.946][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:39.947][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.950][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.958][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:39.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:39.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:39.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:39.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:39.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.969][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:39.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:39.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:39.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.980][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:39.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:39.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:39.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.987][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:39.988][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:39.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.991][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:39.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:39.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.995][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:39.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:39.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:39.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:39.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:39.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.002][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.013][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.017][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.024][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.025][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.028][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.035][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.036][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.037][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.041][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.063][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.070][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.074][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.087][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:40.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.188][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-05 16:04:40.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.250][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.310][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.329][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.330][private$selectFields]
biodb.TRACE[2025-04-05 16:04:40.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:40.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:40.333][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.334][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.337][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.338][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.345][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.359][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.367][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.376][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.388][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.389][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.395][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.410][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.414][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.421][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.428][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:40.429][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:40.430][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.452][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.453][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.459][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.460][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.463][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.466][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.470][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.509][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-05 16:04:40.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.706][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.706][private$selectFields]
biodb.TRACE[2025-04-05 16:04:40.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:40.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:40.709][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:40.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.714][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.721][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.728][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.729][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.732][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.733][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.735][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.739][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.740][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.743][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.746][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.757][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.764][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.769][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:40.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.779][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.787][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.788][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.790][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.798][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:40.799][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:40.800][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.804][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.811][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.815][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.822][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.830][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.831][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.833][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.841][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:40.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:40.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:40.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:40.978][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:40.979][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:40.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:40.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:40.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:40.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:40.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:40.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:40.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:40.997][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:41.000][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:41.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-05 16:04:41.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:41.004][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-05 16:04:41.006][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:41.009][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:41.010][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-05 16:04:41.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:41.013][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-05 16:04:41.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:41.076][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:41.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.132][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.185][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.186][private$selectFields]
biodb.TRACE[2025-04-05 16:04:41.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:41.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:41.188][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.189][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.193][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.200][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.215][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.223][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.231][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.234][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.240][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.247][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.266][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.273][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.274][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.277][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.288][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.289][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.291][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.292][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.293][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.297][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.315][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.316][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.319][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.326][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.330][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.334][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.337][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.353][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.481][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:41.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.499][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.595][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.596][private$selectFields]
biodb.TRACE[2025-04-05 16:04:41.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:41.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:41.598][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.603][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.625][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.626][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.632][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.635][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.643][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.644][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.647][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.650][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.651][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.658][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.661][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.665][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.666][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.673][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.674][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.680][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.691][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.692][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.695][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.696][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.697][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.700][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.701][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.708][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.719][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.720][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.723][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.730][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.731][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.734][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.741][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:41.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.853][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.888][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-05 16:04:41.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:41.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:41.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:41.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:41.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:41.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:41.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:41.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:41.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:41.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.943][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.947][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:41.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:41.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:41.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:41.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:41.995][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:41.996][private$selectFields]
biodb.TRACE[2025-04-05 16:04:41.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:41.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:41.999][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.000][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.004][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.005][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.011][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.015][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.019][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.033][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.034][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.037][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.040][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.041][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.044][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.045][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.052][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.053][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.059][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.081][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.082][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.085][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.092][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.093][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.096][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:42.102][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:42.103][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.107][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.115][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.122][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.126][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.127][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.130][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.133][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.137][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.142][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.144][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:42.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:42.275][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:42.276][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:42.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:42.290][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:42.293][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:42.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-05 16:04:42.296][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:42.297][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-05 16:04:42.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:42.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:42.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:42.361][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:42.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.473][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.474][private$selectFields]
biodb.TRACE[2025-04-05 16:04:42.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:42.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:42.477][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.478][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.479][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.482][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.483][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.489][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.494][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.496][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.504][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.511][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.512][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.515][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.518][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.519][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.522][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.523][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.530][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.531][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.548][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.549][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.552][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.559][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.563][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.568][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.570][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.571][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.574][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.575][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.580][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.602][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.609][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.610][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.613][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.620][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:42.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:42.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:42.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:42.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:42.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:42.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:42.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:42.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.827][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.875][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.876][private$selectFields]
biodb.TRACE[2025-04-05 16:04:42.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:42.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:42.879][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:42.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.884][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.885][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.891][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.898][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.902][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.903][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.906][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.909][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.913][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.914][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.917][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.924][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.925][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.928][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.932][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.939][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.940][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:42.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:42.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.950][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:42.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.954][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:42.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.962][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:42.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.967][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.968][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:42.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.970][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:42.971][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:42.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:42.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.978][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.979][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:42.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.981][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:42.982][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:42.983][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:42.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:42.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.987][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:42.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:42.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:42.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.994][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:42.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:42.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:42.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:42.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:42.999][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.005][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.012][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.013][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.016][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.023][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:43.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:43.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.268][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.269][private$selectFields]
biodb.TRACE[2025-04-05 16:04:43.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:43.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:43.272][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.276][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.277][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.283][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.305][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.306][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.316][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.317][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.320][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.321][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.323][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.324][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.331][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.334][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.335][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.345][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.353][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.356][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.364][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.365][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.368][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:43.369][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:43.370][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.373][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.374][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.381][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.389][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.392][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.393][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.399][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.400][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.403][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.411][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.503][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.507][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-05 16:04:43.550][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:43.551][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-05 16:04:43.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-05 16:04:43.565][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-05 16:04:43.568][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-05 16:04:43.569][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-05 16:04:43.570][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-05 16:04:43.572][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-05 16:04:43.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:43.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:43.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-05 16:04:43.636][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-05 16:04:43.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:43.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:43.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:43.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:43.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:43.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:43.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:43.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.695][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.744][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.745][private$selectFields]
biodb.TRACE[2025-04-05 16:04:43.746][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:43.747][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:43.748][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.749][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.752][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.775][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.782][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.786][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.790][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.793][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.794][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.797][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.801][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.820][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.837][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.838][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.841][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.848][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.849][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:43.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.852][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.853][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:43.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.857][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.858][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.864][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.875][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.876][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.879][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.880][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.886][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.887][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:43.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.890][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:43.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:43.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:43.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:43.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.897][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:43.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:43.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:43.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:43.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:43.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:43.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:43.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:43.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:43.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:43.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:43.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:43.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-05 16:04:44.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:44.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:44.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:44.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:44.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:44.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:44.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.154][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.155][private$selectFields]
biodb.TRACE[2025-04-05 16:04:44.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:44.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:44.158][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.159][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.162][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.170][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.173][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.180][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.181][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.184][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.188][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.191][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.192][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.195][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.202][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.203][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.206][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.209][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.210][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.217][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.232][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.233][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.239][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.243][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.250][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.251][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.254][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:44.255][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:44.256][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.259][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.260][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.267][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.285][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.286][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.289][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.293][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.294][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.296][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.436][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-05 16:04:44.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-05 16:04:44.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:44.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:44.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:44.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:44.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:44.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-05 16:04:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.494][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.539][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.542][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.543][private$selectFields]
biodb.TRACE[2025-04-05 16:04:44.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-05 16:04:44.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-05 16:04:44.546][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-05 16:04:44.547][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.551][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.558][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.580][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.584][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.588][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.589][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.591][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.592][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.595][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.599][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.600][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.606][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.613][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-05 16:04:44.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.628][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.632][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.637][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.639][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.640][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-05 16:04:44.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.643][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:44.644][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-05 16:04:44.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.649][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.656][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.664][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.665][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.667][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.672][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.675][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.678][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.679][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.692][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-05 16:04:44.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-05 16:04:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-05 16:04:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-05 16:04:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-05 16:04:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-05 16:04:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-05 16:04:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-05 16:04:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-05 16:04:44.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-05 16:04:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-05 16:04:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-05 16:04:44.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-05 16:04:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-05 16:04:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-05 16:04:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-05 16:04:44.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-05 16:04:44.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-05 16:04:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-05 16:04:44.824][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-05 16:04:44.825][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-05 16:04:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.834][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-05 16:04:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-05 16:04:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-05 16:04:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-05 16:04:44.844][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-05 16:04:44.845][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-04-05 16:04:44.846][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-04-05 16:04:44.847][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-05 16:04:44.848][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-05 16:04:44.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-05 16:04:44.849][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-05 16:04:44.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-05 16:04:44.851][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-05 16:04:44.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1389 ]
>
> proc.time()
user system elapsed
85.300 3.174 185.044
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck’
* using R Under development (unstable) (2025-03-13 r87965)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** this is package ‘biodbChebi’ version ‘1.13.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)